Merge pull request #583 from thewtex/ci-install

BUG: Install all package dependencies in CI

Author: thewtex

.github/workflows/notebook-test.yml

@@ -11,6 +11,8 @@ jobs:
         python-version: ['3.7', '3.8', '3.9', '3.10']
     steps:
       - uses: actions/checkout@v3
+        with:
+          fetch-depth: 0
 
       - name: Set up Python ${{ matrix.python-version }}
         uses: actions/setup-python@v3
@@ -25,7 +27,7 @@ jobs:
       - name: Install test dependencies
         run: |
           python3 -m pip install --upgrade pip
-          python3 -m pip install -e ".[test]"
+          python3 -m pip install -e ".[test,all]"
           python3 -m pip install pyimagej
           python3 -c "import imagej; ij = imagej.init('2.5.0'); print(ij.getVersion())"
           python3 -m pip install --upgrade --pre itk

.github/workflows/publish.yml

@@ -11,6 +11,8 @@ jobs:
 
     steps:
     - uses: actions/checkout@v3
+      with:
+        fetch-depth: 0
     - name: Install build dependencies
       run: python -m pip install --upgrade hatch
     - name: Build

itkwidgets/integrations/environment.py

@@ -1,5 +1,6 @@
 from enum import Enum
 from importlib import import_module
+import sys
 
 
 class Env(Enum):
@@ -37,7 +38,7 @@ def find_env():
 ENVIRONMENT = find_env()
 
 if ENVIRONMENT is not Env.COLAB:
-    if ENVIRONMENT is Env.JUPYTER_NOTEBOOK:
+    if ENVIRONMENT is Env.JUPYTER_NOTEBOOK and sys.version_info.minor > 7:
         try:
             import imjoy_jupyter_extension
         except:
@@ -47,15 +48,14 @@ def find_env():
             import_module("imjoy-jupyterlab-extension")
         except:
             if ENVIRONMENT is Env.JUPYTERLITE:
-                print('imjoy-jupyterlab-extension is required')
                 raise RuntimeError('imjoy-jupyterlab-extension is required. Install the package and refresh page.')
-            else:
+            elif sys.version_info.minor > 7:
                 raise RuntimeError('imjoy-jupyterlab-extension is required. `pip install itkwidgets[lab]` and refresh page.')
 
 try:
     import imjoy_elfinder
 except:
     if ENVIRONMENT is Env.JUPYTERLITE:
         raise RuntimeError('imjoy-elfinder is required. Install the package and refresh page.')
-    else:
+    elif sys.version_info.minor > 7:
         raise RuntimeError('imjoy-elfinder is required. `pip install imjoy-elfinder` and refresh page.')