ODK 1.6 pre-relese checklist #1265
Description
Run test releases
For each of this, we run update_repo and release
- Mondo (docs) (a lot of use of old tools, like owltools, interleaved with ROBOT, heavy dependencies on serialisations, perl scripts);
- Mondo Ingest (a lot of use of sssom-py and OAK, interleaved with heavyweight ROBOT pipelines);
- Uberon (ROBOT plugins, old tools like owltools);
- Update to ODK 1.6 obophenotype/human-phenotype-ontology#11165
- Cell Ontology (relatively standard, high impact ODK setup).
- Update to ODK 1.6 EnvironmentOntology/environmental-exposure-ontology#253
- FlyBase ontologies (fbbt, fbcv, dpo);
- NCBITaxon;
-
Zebrafish Phenotype Ontology (should only be done in collaboration with a ZP core developer, too many points of failure);(did ECTO instead) - Update ODK 1.6 release files oborel/obo-relations#851
- Update ODK 1.6 migration files obophenotype/bio-attribute-ontology#373
Discuss / reject issues
- Preserve non-ODK-managed imports by default. #1259
- Weird warning when during make build that should? cause an error? #1258
- Migrating from 1.5.4 to 1.6 with run.sh causes error #1257
- Replacing -B with
cleancauses some repos with committed files in TMP to lose them #1261 - Weaving validate_idranges into test will cause a lot of community support requests #1262
- RO release fails because of
INVALID IRI ERROR value "%{version_iri}"#1266 - Dependencies on
component-download-%.owlbreak with MIR=false #1272 - How to skip odk:imports during update_repo #1274