ScipionCloud AMI manual
To resize screen clicks on the Settings icon and choose Remote resizing as Scaling mode:
To disconnect from the session click on the little arrow that appears on the left (see menu below) and click on the last option:
IMPORTANT!! Do not disconnect from the top right corner, as in a physical machine. If you do so the machine will need to be reboot
The AMI is based on Ubuntu 16.04 server AMI.
The following software is installed on the machine:
The latest stable release of Scipion (from github) is installed at: /usr/local/scipion
There is an icon on desktop that starts scipion. There is also an alias to run it from terminal.
Note: Both alias and desktop shortcut start Scipion through VirtualGL, this is to make chimera work on GPU powered machines.
- Ctffind4 4.1.8
- Gctf 1.06
- Gautomatch 0.53
- Eman 2.12
- Frealing 9.07
- Motioncor2 1.0.2
- Motioncorr 2.1
- Relion 2.0
- resmap 1.1.5s2
- Spider 21.13
- chimera 1.10.1
To verify installed packages type:
scipion install --help
And to install latest version of a package:
scipion install package-name
Relion is compiled with CUDA support.
- Nvidia driver version 387
- CUDA 7.5, 8.0 and 9.1 (default cuda links to 7.5) on /usr/local/.
- TurboVNC 2.1.1 on /opt/TurboVNC.
- VirtualGL 2.5.2 on /opt/VirtualGL.
- noVNC on /opt/noVNC.