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docs/Installation/InstallationNotes/index.rst

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@@ -12,42 +12,6 @@ recommend you to follow the guide for installation of CUDA 11.4 (deb
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(local))
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Matlab
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-------
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Xmipp has a binding to MATLAB, which allows the user to run specific
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Xmipp functions inside MATLAB.
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Previous requirements
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^^^^^^^^^^^^
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It is required to have a regular MATLAB installation.
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Settings
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^^^^^^^^^^^^^^^^^^^^
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Make sure you have these settings in your Xmipp configuration file
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(``xmipp-bundle/xmipp.conf``) before compiling Xmipp:
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``MATLAB=True``
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``MATLAB_DIR=<path to your MATLAB instalation>`` (usually something
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like: ``MATLAB_DIR=/home/user/MATLAB/R2021b``)
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Run
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^^^^^^^^^^^^^^^^^^^^
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1. Compile Xmipp normally (once the settings are as above): ``./xmipp``
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or ``scipion run ./xmipp``
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2. Open MATLAB
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3. In MATLAB, set the path to Xmipp binding:
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``HOME > Set Path > Add Folder...`` and select the path to the
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binding (``<path to xmipp>/xmipp-bundle/build/bindings/matlab``),
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then, click in ``Open`` and ``Save``
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4. Now you should be able to run functions like ``xmipp_read()`` in
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MATLAB
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DeepLearningToolkit
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---------------------
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@@ -144,3 +108,40 @@ Program using this environment:* `tomogram_reconstruction`
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- numpy
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- tigre
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Matlab
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-------
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Xmipp has a binding to MATLAB, which allows the user to run specific
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Xmipp functions inside MATLAB.
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Previous requirements
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^^^^^^^^^^^^
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It is required to have a regular MATLAB installation.
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124+
Settings
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^^^^^^^^^^^^^^^^^^^^
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Make sure you have these settings in your Xmipp configuration file
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(``xmipp-bundle/xmipp.conf``) before compiling Xmipp:
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``MATLAB=True``
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``MATLAB_DIR=<path to your MATLAB instalation>`` (usually something
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like: ``MATLAB_DIR=/home/user/MATLAB/R2021b``)
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Run
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^^^^^^^^^^^^^^^^^^^^
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1. Compile Xmipp normally (once the settings are as above): ``./xmipp``
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or ``scipion run ./xmipp``
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2. Open MATLAB
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3. In MATLAB, set the path to Xmipp binding:
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``HOME > Set Path > Add Folder...`` and select the path to the
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binding (``<path to xmipp>/xmipp-bundle/build/bindings/matlab``),
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then, click in ``Open`` and ``Save``
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4. Now you should be able to run functions like ``xmipp_read()`` in
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MATLAB
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