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Copy file name to clipboardExpand all lines: docs/Installation/Troubleshooting/index.rst
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@@ -33,33 +33,33 @@ We sometimes see issues regarding the HDF5 dependency related some incompatibili
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- If hdf5 is installed on the Scipion3 enviroment, remove and reinstall it (it might lead to compile/link time issues caused by incompatible version being fetched)
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.. code-block:: bash
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.. code-block:: bash
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scipion3 conda remove hdf5
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scipion3 conda install -c conda-forge hdf5
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scipion3 conda remove hdf5
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scipion3 conda install -c conda-forge hdf5
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- If you have install hdf5 just in your system, we recommend to install hdf5 in the Scipion enviroment. To do that:
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.. code-block:: bash
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.. code-block:: bash
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scipion3 conda install -c conda-forge hdf5
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scipion3 conda install -c conda-forge hdf5
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- If you have installed hdf5 in your system and you can not use conda, please remove hdf5 an all files it creates and reinstall it:
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.. code-block:: bash
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.. code-block:: bash
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sudo apt remove hdf5-devel
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sudo apt remove hdf5-devel
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Remove all files related to hdf5 in /usr/lib64/libhdf5*, /usr/include/hdf5* and .../anaconda3/include/hdf5*.
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Remove all files related to hdf5 in /usr/lib64/libhdf5*, /usr/include/hdf5* and .../anaconda3/include/hdf5*.
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We strongy recommend you to install it via your default package manager:
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We strongy recommend you to install it via your default package manager:
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