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1 | 1 | Releases scipion-em-xmipp
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2 | 2 | =========================
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| 3 | +3.24.12 - Poseidon |
| 4 | +-------------------------- |
| 5 | +- New protocols |
| 6 | + - apply_tilt_to_ctf: Apply a local deviation to the CTF based on the micrograph's tilt |
| 7 | + angle |
| 8 | + - mics_defocus_balancer: It takes as input a certain number of CTFs and makes a balanced sampling of N images based on the defocus U values |
| 9 | + - deep_center_predict: Center a set of particles in 2D using a neural network |
| 10 | + - cl2d_clustering: 2D clustering protocol to group similar images (2D Averages or 2D Classes) |
| 11 | + |
| 12 | +- Protocols updated |
| 13 | + - convert_pdb: now can read cif |
| 14 | + - flexalign: Added support for reading EER. Optimized and refactor the streaming, the continue action stabilized |
| 15 | + - create_gallery: Allow Scipion protocol create gallery to access missing projection options |
| 16 | + - ctf_consensus: optimized and refactor the streaming, the continue action stabilized. Remove parallelization |
| 17 | + - movie_dose_analysis: optimized and refactor the streaming, the continue action stabilized |
| 18 | + - movie_max_shift: optimized and refactor the streaming, the continue action stabilized, Remove parallelization |
| 19 | + - tilt_analysis: optimized and refactor the streaming, the continue action stabilized |
| 20 | + - subtract_projection: Adaptations for new logic in Xmipp program |
| 21 | + - reconstruct_highres: Add GPU use for local angle assignment |
| 22 | + |
| 23 | +- Protocols fixed |
| 24 | + - trigger_data: Fix the way we split the output |
| 25 | + - subtract_projection: fnMask sub |
| 26 | + - classify_pca: Bug fix in the validate function |
| 27 | + - reconstruct_fourier: Fourier reconstruction now allows performing the CTF correction inside the same protocol. |
| 28 | + - volume_local_sharpening: local deblur performs now a single iteration by defaul |
| 29 | + - movie_max_shift: fixed with several parallel threads in streaming |
| 30 | + - reconstruct_highres: add unassigned vars fnVol1 fnVol2 to set loop |
| 31 | + - ctf_defocus_group: fix when testing multiple downsampling factors |
| 32 | + - ctf_micrographs: fix when testing multiple downsampling factors |
| 33 | + |
| 34 | +- Protocols deprecated (For more details visit [this](https://github.com/I2PC/xmipp/wiki/Deprecating-programs-and-protocols)) |
| 35 | + - angular_resolution_alignment |
| 36 | + - movie_opticalflow.py |
| 37 | + |
| 38 | +- More scipion-em-xmipp |
| 39 | + - scikit-learn updated to 1.2 |
| 40 | + - protocols.conf list completed. All protocols are listed and clustered in Scipion |
| 41 | + |
3 | 42 | 3.24.06 - Oceanus
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4 | 43 | --------------------------
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5 | 44 |
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