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u0028003
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Added unit tests to the JobRunner
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-71
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15 files changed

+199
-71
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‎TestData/GSync/NoUpload/testTooSmall.bed.gz

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‎TestData/JobRunner/JRTestDataBundle.zip

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‎TestData/JobRunner/TestJobs/BadJob/mainJob.sh

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set -e
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echo "Listing the contents of a non existant file, this should fail."
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ls -la NonExistantFile
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‎TestData/JobRunner/TestJobs/BadJob/mainJob_JR_INIT.sh

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echo "Downloading a file and checking it's integrity..."
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aws s3 cp s3://hcibioinfo-jobrunner-test/JRTestDataBundle.zip ./TestDownload.zip
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unzip -t TestDownload.zip
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‎TestData/JobRunner/TestJobs/BadJob/mainJob_JR_TERM.sh

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echo "Remove the zip archive and create a new file..."
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rm -f JRTestDataBundle.zip
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touch termCompleted.txt
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‎TestData/JobRunner/TestJobs/OKJob1/mainJob.sh

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echo "Listing the contents of the downloaded zip archive"
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unzip -l TestDownload.zip
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‎TestData/JobRunner/TestJobs/OKJob1/mainJob.sh_JR_START

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‎TestData/JobRunner/TestJobs/OKJob1/mainJob_JR_INIT.sh

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echo "Downloading a file and checking it's integrity..."
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aws s3 cp s3://hcibioinfo-jobrunner-test/JRTestDataBundle.zip ./TestDownload.zip
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unzip -t TestDownload.zip
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‎TestData/JobRunner/TestJobs/OKJob1/mainJob_JR_TERM.sh

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echo "Remove the zip archive and create a new file..."
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rm -f JRTestDataBundle.zip
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touch termCompleted.txt
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‎TestData/JobRunner/TestJobs/OKJob2/JR_INIT.sh

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echo "Downloading a file and checking it's integrity..."
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aws s3 cp s3://hcibioinfo-jobrunner-test/JRTestDataBundle.zip ./TestDownload.zip
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unzip -t TestDownload.zip
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‎TestData/JobRunner/TestJobs/OKJob2/JR_TERM.sh

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echo "Remove the zip archive and create a new file..."
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rm -f JRTestDataBundle.zip
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touch termCompletedForJob2.txt
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‎TestData/JobRunner/TestJobs/OKJob2/mainJob.sh

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echo "Rename the TestDownload.zip file to RenamedArchive.zip"
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mv TestDownload.zip RenamedArchive.zip
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‎TestData/JobRunner/TestJobs/OKJob2/mainJob.sh_JR_START

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