BMS additions (#288)

* allow articles in git

* sandwich

* no changes

* wip before major updates

* wip working...

* works

* wip

* wip updating

* updates before editing

* rm data with weights

* first vignette

* able to rerun everything

* finished pass

* Update .gitignore

Co-authored-by: Isaac Gravestock <83659704+gravesti@users.noreply.github.com>

* Update vignettes/references.bib

Co-authored-by: Isaac Gravestock <83659704+gravesti@users.noreply.github.com>

* wip

* add lilly as contributor

* WIP

* wip2

* finished first pass

* rebuilt

* DESC update

---------

Co-authored-by: Isaac Gravestock <83659704+gravesti@users.noreply.github.com>

Author: mattsecrest

DESCRIPTION

@@ -34,6 +34,18 @@ Authors@R: c(
       role = c("ctb"),
       email = "mingyang.shan@lilly.com"
    ),
+   person(
+      given = "Kexin",
+      family = "Jin",
+      role = c("ctb"),
+      email = "kexin.jin@bms.com"
+   ),
+   person(
+      given = "Zhi",
+      family = "Yang",
+      role = c("ctb"),
+      email = "zhi.yang@bms.com"
+   ),
    person("Genentech, Inc.", role = c("cph", "fnd"))
    )
 Description: Bayesian dynamic borrowing is an approach to incorporating external

vignettes/figure-simulation_study-unnamed-chunk-26-1.png

@@ -246,6 +246,7 @@ ext.cont.data <- rcorrvar2(n = n_ec, k_cont = k_cont, k_cat = k_cat, k_nb = 0,
 #> Constants calculation time: 0.003 minutes 
 #> Intercorrelation calculation time: 0.001 minutes 
 #> Error loop calculation time: 0 minutes 
+
 #> Total Simulation time: 0.005 minutes
 ```
 

vignettes/figure-simulation_study-unnamed-chunk-27-1.png

@@ -343,6 +343,7 @@ results.exp.psborrow<- mcmc_sample(anls_obj,
 #> Mean chain execution time: 12.5 seconds.
 #> Total execution time: 38.0 seconds.
 
+
 draws1 <- results.exp.psborrow$draws()
 draws1 <- rename_draws_covariates(draws1, anls_obj)
 ```
@@ -1211,6 +1212,7 @@ results.no.psborrow<- mcmc_sample(anls_obj,
 )
 #> Running MCMC with 3 sequential chains...
 #> 
+
 #> Chain 1 finished in 4.1 seconds.
 #> Chain 2 finished in 4.1 seconds.
 #> Chain 3 finished in 4.0 seconds.