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Description
Hi!
I have a question about running the code with single-cell-HiC data. I downloaded the data from https://www.ebi.ac.uk/ena/browser/view/PRJNA858080. Then I ran the code with Nextflow. I get this error message:
Error executing process > 'unzip (1)'
Caused by:
Process unzip (1)
terminated with an error exit status (1)
Command executed:
if [[ SRR20110161.fastq.gz == *.gz ]]; then
unpigz SRR20110161.fastq.gz -p 20 -c > SRR20110161_1.fq
unpigz null -p 20 -c > SRR20110161_2.fq
else
ln -s SRR20110161.fastq.gz SRR20110161_1.fq
ln -s null SRR20110161_2.fq
fi
Command exit status:
1
Command output:
(empty)
Command error:
unpigz: skipping: null does not exist
Work dir:
/home/msbb/Yasmine/test_DLO/work/97/c23805a0de1db40bd67a957a591949
Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run
When I run this code with the paired test file, it works fine. Can I use the code for my specific data (unpaired)?
I was wondering if you could help me with this.
Thank you in advance!
Greetings,
Yasmine