AttributeError: 'NoneType' object has no attribute 'group' #8
Description
dear developer,
the gushr example run without errors.
./gushr.py -t example/augustus.gtf -b example/RNAseq.bam -g example/genome.fa -o utrs -a /home/ubuntu/miniconda3/bin/ -j /usr/bin/
./gushr.py -t analysis/Helsinki_Plus_Feywei_nonOverlapping_annotation.gff -b analysis/Cday10_1.bam -g analysis/assembly.fasta.PolcaCorrected.FINAL.fasta -o utrs -a /home/ubuntu/miniconda3/bin/ -j /usr/bin/
the actual run spit out this error:
Traceback (most recent call last):
File "./gushr.py", line 752, in
merge_original_with_utrs(args.gtf, utrs_gtf)
File "./gushr.py", line 660, in merge_original_with_utrs
txid = re.search(r'transcript_id "([^"]+)"', line).group(1)
AttributeError: 'NoneType' object has no attribute 'group'
could you let me know what could be the problem?
Cheers,
Jolene