Merge #1110

1110: fix tests and new version r=CarloLucibello a=CarloLucibello

Add to set the Boston Housing dataset tests as broken due to as SSL certificate expiration problem wich is not our fault

Co-authored-by: Carlo Lucibello <carlo.lucibello@gmail.com>

Author: bors[bot]

.travis.yml

@@ -7,6 +7,7 @@ os:
 
 julia:
   - 1.3
+  - 1
   - nightly
 
 notifications:
@@ -15,7 +16,7 @@ notifications:
 jobs:
   include:
     - stage: "Documentation"
-      julia: 1.3
+      julia: 1
       os: linux
       script:
         - julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd()));

Manifest.toml

@@ -20,9 +20,9 @@ version = "1.0.1"
 
 [[ArrayLayouts]]
 deps = ["FillArrays", "LinearAlgebra"]
-git-tree-sha1 = "bc779df8d73be70e4e05a63727d3a4dfb4c52b1f"
+git-tree-sha1 = "41956a49a8a4fefa1bf6664bca4a3035aba4c3a0"
 uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a"
-version = "0.1.5"
+version = "0.2.3"
 
 [[Base64]]
 uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
@@ -52,9 +52,9 @@ version = "6.2.2"
 
 [[CUDAnative]]
 deps = ["Adapt", "BinaryProvider", "CEnum", "CUDAapi", "CUDAdrv", "Cthulhu", "DataStructures", "InteractiveUtils", "LLVM", "Libdl", "MacroTools", "Pkg", "Printf", "TimerOutputs"]
-git-tree-sha1 = "4168c40ca3ff3475bc29a20a09ab7b910c4b8ef0"
+git-tree-sha1 = "d1fc99635d0002c8a819b78cb1f441eb44310725"
 uuid = "be33ccc6-a3ff-5ff2-a52e-74243cff1e17"
-version = "3.0.1"
+version = "3.0.2"
 
 [[CodeTracking]]
 deps = ["InteractiveUtils", "UUIDs"]
@@ -86,23 +86,17 @@ git-tree-sha1 = "efdaf19ab11c7889334ca247ff4c9f7c322817b0"
 uuid = "bbf7d656-a473-5ed7-a52c-81e309532950"
 version = "0.2.0"
 
-[[Compat]]
-deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
-git-tree-sha1 = "ed2c4abadf84c53d9e58510b5fc48912c2336fbb"
-uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "2.2.0"
-
 [[CompilerSupportLibraries_jll]]
 deps = ["Libdl", "Pkg"]
-git-tree-sha1 = "067567a322fe466c5ec8d01413eee7127bd11699"
+git-tree-sha1 = "7c4f882c41faa72118841185afc58a2eb00ef612"
 uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
-version = "0.3.1+0"
+version = "0.3.3+0"
 
 [[Cthulhu]]
-deps = ["CodeTracking", "InteractiveUtils", "TerminalMenus", "Unicode"]
-git-tree-sha1 = "5e0f928ccaab1fa2911fc4e204e8a6f5b0213eaf"
+deps = ["CodeTracking", "InteractiveUtils", "REPL", "Unicode"]
+git-tree-sha1 = "484790098c85c26f8e59051f8ff1a0745c034a7d"
 uuid = "f68482b8-f384-11e8-15f7-abe071a5a75f"
-version = "1.0.0"
+version = "1.0.1"
 
 [[CuArrays]]
 deps = ["AbstractFFTs", "Adapt", "CEnum", "CUDAapi", "CUDAdrv", "CUDAnative", "DataStructures", "GPUArrays", "Libdl", "LinearAlgebra", "MacroTools", "NNlib", "Pkg", "Printf", "Random", "Reexport", "Requires", "SparseArrays", "Statistics", "TimerOutputs"]
@@ -117,9 +111,9 @@ version = "1.1.0"
 
 [[DataStructures]]
 deps = ["InteractiveUtils", "OrderedCollections"]
-git-tree-sha1 = "5a431d46abf2ef2a4d5d00bd0ae61f651cf854c8"
+git-tree-sha1 = "73eb18320fe3ba58790c8b8f6f89420f0a622773"
 uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
-version = "0.17.10"
+version = "0.17.11"
 
 [[Dates]]
 deps = ["Printf"]
@@ -145,23 +139,11 @@ version = "1.0.1"
 deps = ["Random", "Serialization", "Sockets"]
 uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
-[[FFTW]]
-deps = ["AbstractFFTs", "FFTW_jll", "IntelOpenMP_jll", "Libdl", "LinearAlgebra", "MKL_jll", "Reexport"]
-git-tree-sha1 = "109d82fa4b00429f9afcce873e9f746f11f018d3"
-uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
-version = "1.2.0"
-
-[[FFTW_jll]]
-deps = ["Libdl", "Pkg"]
-git-tree-sha1 = "ddb57f4cf125243b4aa4908c94d73a805f3cbf2c"
-uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a"
-version = "3.3.9+4"
-
 [[FillArrays]]
 deps = ["LinearAlgebra", "Random", "SparseArrays"]
-git-tree-sha1 = "85c6b57e2680fa28d5c8adc798967377646fbf66"
+git-tree-sha1 = "51cc2f9bc4eb9c6c0e81ec2f779d1085583cc956"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "0.8.5"
+version = "0.8.7"
 
 [[FixedPointNumbers]]
 git-tree-sha1 = "3ba9ea634d4c8b289d590403b4a06f8e227a6238"
@@ -170,9 +152,9 @@ version = "0.8.0"
 
 [[ForwardDiff]]
 deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "NaNMath", "Random", "SpecialFunctions", "StaticArrays"]
-git-tree-sha1 = "88b082d492be6b63f967b6c96b352e25ced1a34c"
+git-tree-sha1 = "869540e4367122fbffaace383a5bdc34d6e5e5ac"
 uuid = "f6369f11-7733-5829-9624-2563aa707210"
-version = "0.10.9"
+version = "0.10.10"
 
 [[GPUArrays]]
 deps = ["AbstractFFTs", "Adapt", "LinearAlgebra", "Printf", "Random", "Serialization"]
@@ -186,12 +168,6 @@ git-tree-sha1 = "1a4355e4b5b50be2311ebb644f34f3306dbd0410"
 uuid = "7869d1d1-7146-5819-86e3-90919afe41df"
 version = "0.3.1"
 
-[[IntelOpenMP_jll]]
-deps = ["Libdl", "Pkg"]
-git-tree-sha1 = "fb8e1c7a5594ba56f9011310790e03b5384998d6"
-uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0"
-version = "2018.0.3+0"
-
 [[InteractiveUtils]]
 deps = ["Markdown"]
 uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
@@ -209,6 +185,7 @@ uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
 version = "1.3.4"
 
 [[LibGit2]]
+deps = ["Printf"]
 uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
 
 [[Libdl]]
@@ -221,12 +198,6 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 [[Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
-[[MKL_jll]]
-deps = ["IntelOpenMP_jll", "Libdl", "Pkg"]
-git-tree-sha1 = "720629cc8cbd12c146ca01b661fd1a6cf66e2ff4"
-uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
-version = "2019.0.117+2"
-
 [[MacroTools]]
 deps = ["Markdown", "Random"]
 git-tree-sha1 = "f7d2e3f654af75f01ec49be82c231c382214223a"
@@ -313,10 +284,6 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
 [[Serialization]]
 uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
 
-[[SharedArrays]]
-deps = ["Distributed", "Mmap", "Random", "Serialization"]
-uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383"
-
 [[Sockets]]
 uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
 
@@ -348,15 +315,9 @@ uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 
 [[StatsBase]]
 deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics"]
-git-tree-sha1 = "19bfcb46245f69ff4013b3df3b977a289852c3a1"
+git-tree-sha1 = "a6102b1f364befdb05746f386b67c6b7e3262c45"
 uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
-version = "0.32.2"
-
-[[TerminalMenus]]
-deps = ["Compat", "REPL", "Test"]
-git-tree-sha1 = "9ae6ed0c94eee4d898e049820942af21daf15efc"
-uuid = "dc548174-15c3-5faf-af27-7997cfbde655"
-version = "0.1.0"
+version = "0.33.0"
 
 [[Test]]
 deps = ["Distributed", "InteractiveUtils", "Logging", "Random"]
@@ -389,15 +350,15 @@ version = "0.9.1"
 
 [[Zlib_jll]]
 deps = ["Libdl", "Pkg"]
-git-tree-sha1 = "fd36a6739e256527287c5444960d0266712cd49e"
+git-tree-sha1 = "2f6c3e15e20e036ee0a0965879b31442b7ec50fa"
 uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
-version = "1.2.11+8"
+version = "1.2.11+9"
 
 [[Zygote]]
-deps = ["ArrayLayouts", "DiffRules", "FFTW", "FillArrays", "ForwardDiff", "IRTools", "InteractiveUtils", "LinearAlgebra", "MacroTools", "NNlib", "NaNMath", "Random", "Requires", "SpecialFunctions", "Statistics", "ZygoteRules"]
-git-tree-sha1 = "9688fce24bd8a9468fed12f3d5206099a39054dc"
+deps = ["AbstractFFTs", "ArrayLayouts", "DiffRules", "FillArrays", "ForwardDiff", "IRTools", "InteractiveUtils", "LinearAlgebra", "MacroTools", "NNlib", "NaNMath", "Random", "Requires", "SpecialFunctions", "Statistics", "ZygoteRules"]
+git-tree-sha1 = "1ccbfbe8930376e31752b812daa2532c723dc332"
 uuid = "e88e6eb3-aa80-5325-afca-941959d7151f"
-version = "0.4.12"
+version = "0.4.13"
 
 [[ZygoteRules]]
 deps = ["MacroTools"]

Project.toml

@@ -1,6 +1,6 @@
 name = "Flux"
 uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c"
-version = "0.10.3"
+version = "0.10.4"
 
 [deps]
 AbstractTrees = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
@@ -35,8 +35,8 @@ NNlib = "0.6"
 Reexport = "0.2"
 StatsBase = "0"
 ZipFile = "0.7, 0.8, 0.9"
-Zygote = "0.4"
-julia = "1"
+Zygote = "0.4.13"
+julia = "1.3"
 
 [extras]
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"

src/data/housing.jl

@@ -50,7 +50,7 @@ function load()
     isfile(deps("housing.data")) && return
 
     @info "Downloading the Boston housing Dataset"
-    download_and_verify("$(cache_prefix)https://archive.ics.uci.edu/ml/machine-learning-databases/housing/housing.data",
+    download_and_verify("$(cache_prefix)http://archive.ics.uci.edu/ml/machine-learning-databases/housing/housing.data",
                         deps("housing.data"),
                         "baadf72995725d76efe787b664e1f083388c79ba21ef9a7990d87f774184735a")
 

test/data.jl

@@ -76,8 +76,9 @@ end
     @test size(Iris.labels()) == (150,)
 end
 
+
 @testset "Housing" begin
-    @test Housing.features() isa Matrix
+    @test Housing.features() isa Matrix # test broken due to SSL certifate expiration problem
     @test size(Housing.features()) == (506, 13)
 
     @test Housing.targets() isa Array{Float64}