Merge branch 'master' into linear-regression

Author: ToucheSir

NEWS.md

@@ -2,6 +2,7 @@
 
 ## v0.13.7
 * Added [`@autosize` macro](https://github.com/FluxML/Flux.jl/pull/2078)
+* New method of `train!` using Zygote's "explicit" mode. Part of a move away from "implicit" `Params`.
 
 ## v0.13.4
 * Added [`PairwiseFusion` layer](https://github.com/FluxML/Flux.jl/pull/1983)

Project.toml

@@ -1,10 +1,9 @@
 name = "Flux"
 uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c"
-version = "0.13.6" 
+version = "0.13.8"
 
 [deps]
 Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
-ArrayInterface = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
 CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
 ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
 Functors = "d9f16b24-f501-4c13-a1f2-28368ffc5196"
@@ -27,16 +26,15 @@ Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 
 [compat]
 Adapt = "3.0"
-ArrayInterface = "3.1, 4, 5, 6"
 CUDA = "3"
 ChainRulesCore = "1.12"
 Functors = "0.3"
-MLUtils = "0.2"
+MLUtils = "0.2, 0.3.1"
 MacroTools = "0.5"
 NNlib = "0.8.9"
 NNlibCUDA = "0.2.4"
-OneHotArrays = "0.1"
-Optimisers = "0.2.1"
+OneHotArrays = "0.1, 0.2"
+Optimisers = "0.2.10"
 ProgressLogging = "0.1"
 Reexport = "0.2, 1.0"
 SpecialFunctions = "1.8.2, 2.1.2"

docs/src/models/overview.md

@@ -77,13 +77,15 @@ julia> predict(x_train)
 In order to make better predictions, you'll need to provide a *loss function* to tell Flux how to objectively *evaluate* the quality of a prediction. Loss functions compute the cumulative distance between actual values and predictions. 
 
 ```jldoctest overview; filter = r"[+-]?([0-9]*[.])?[0-9]+(f[+-]*[0-9])?"
-julia> loss(x, y) = Flux.Losses.mse(predict(x), y);
+julia> using Statistics
 
-julia> loss(x_train, y_train)
+julia> loss(model, x, y) = mean(abs2.(model(x) .- y));
+
+julia> loss(predict, x_train, y_train)
 122.64734f0
 ```
 
-More accurate predictions will yield a lower loss. You can write your own loss functions or rely on those already provided by Flux. This loss function is called [mean squared error](https://www.statisticshowto.com/probability-and-statistics/statistics-definitions/mean-squared-error/). Flux works by iteratively reducing the loss through *training*.
+More accurate predictions will yield a lower loss. You can write your own loss functions or rely on those already provided by Flux. This loss function is called [mean squared error](https://www.statisticshowto.com/probability-and-statistics/statistics-definitions/mean-squared-error/) (and built-in as [`mse`](@ref Flux.Losses.mse)). Flux works by iteratively reducing the loss through *training*.
 
 ## 3. Improve the Prediction
 
@@ -112,40 +114,28 @@ julia> predict.bias
  0.0
 ```
 
-The dimensions of these model parameters depend on the number of inputs and outputs. Since models can have hundreds of inputs and several layers, it helps to have a function to collect the parameters into the data structure Flux expects:
-
-```jldoctest overview; filter = r"[+-]?([0-9]*[.])?[0-9]+(f[+-]*[0-9])?"
-julia> parameters = Flux.params(predict)
-Params([Float32[0.9066542], Float32[0.0]])
-```
-
-These are the parameters Flux will change, one step at a time, to improve predictions. At each step, the contents of this `Params` object changes too, since it is just a collection of references to the mutable arrays inside the model: 
-
-```jldoctest overview
-julia> predict.weight in parameters, predict.bias in parameters
-(true, true)
-```
+The dimensions of these model parameters depend on the number of inputs and outputs.
 
-The first parameter is the weight and the second is the bias. Flux will adjust predictions by iteratively changing these parameters according to the optimizer.
+Flux will adjust predictions by iteratively changing these parameters according to the optimizer.
 
 This optimiser implements the classic gradient descent strategy. Now improve the parameters of the model with a call to [`Flux.train!`](@ref) like this:
 
 ```jldoctest overview
-julia> train!(loss, parameters, data, opt)
+julia> train!(loss, predict, data, opt)
 ```
 
 And check the loss:
 
 ```jldoctest overview; filter = r"[+-]?([0-9]*[.])?[0-9]+(f[+-]*[0-9])?"
-julia> loss(x_train, y_train)
+julia> loss(predict, x_train, y_train)
 116.38745f0
 ```
 
 It went down. Why? 
 
 ```jldoctest overview; filter = r"[+-]?([0-9]*[.])?[0-9]+(f[+-]*[0-9])?"
-julia> parameters
-Params([Float32[7.5777884], Float32[1.9466728]])
+julia> predict.weight, predict.bias
+(Float32[7.5777884], Float32[1.9466728])
 ```
 
 The parameters have changed. This single step is the essence of machine learning.
@@ -156,14 +146,14 @@ In the previous section, we made a single call to `train!` which iterates over t
 
 ```jldoctest overview; filter = r"[+-]?([0-9]*[.])?[0-9]+(f[+-]*[0-9])?"
 julia> for epoch in 1:200
-         train!(loss, parameters, data, opt)
+         train!(loss, predict, data, opt)
        end
 
-julia> loss(x_train, y_train)
+julia> loss(predict, x_train, y_train)
 0.00339581f0
 
-julia> parameters
-Params([Float32[4.0178537], Float32[2.0050256]])
+julia> predict.weight, predict.bias
+(Float32[4.0178537], Float32[2.0050256])
 ```
 
 After 200 training steps, the loss went down, and the parameters are getting close to those in the function the model is built to predict.
@@ -188,7 +178,7 @@ First, we gathered real-world data into the variables `x_train`, `y_train`, `x_t
 
 Then, we built a single input, single output predictive model, `predict = Dense(1 => 1)`. The initial predictions weren't accurate, because we had not trained the model yet.
 
-After building the model, we trained it with `train!(loss, parameters, data, opt)`. The loss function is first, followed by the `parameters` holding the weights and biases of the model, the training data, and the `Descent` optimizer provided by Flux. We ran the training step once, and observed that the parameters changed and the loss went down. Then, we ran the `train!` many times to finish the training process.
+After building the model, we trained it with `train!(loss, predict, data, opt)`. The loss function is first, followed by the model itself, the training data, and the `Descent` optimizer provided by Flux. We ran the training step once, and observed that the parameters changed and the loss went down. Then, we ran the `train!` many times to finish the training process.
 
 After we trained the model, we verified it with the test data to verify the results. 
 

src/Flux.jl

@@ -34,6 +34,10 @@ export Descent, Adam, Momentum, Nesterov, RMSProp,
   AdamW, RAdam, AdaBelief, InvDecay, ExpDecay,
   WeightDecay, ClipValue, ClipNorm
 
+include("train.jl")
+using .Train
+# using .Train: setup, @train_autodiff
+
 using CUDA
 const use_cuda = Ref{Union{Nothing,Bool}}(nothing)
 

src/deprecations.jl

@@ -82,3 +82,105 @@ Base.@deprecate_binding ADAGrad AdaGrad
 Base.@deprecate_binding ADADelta AdaDelta
 
 @deprecate rng_from_array() default_rng_value()
+
+#=
+  # Valid method in Optimise, old implicit style, is:
+  train!(loss, ps::Params, data, opt::AbstractOptimiser; cb = () -> ())
+
+  # Valid methods in Train, new explict style, are:
+  train!(loss, model, data, opt)  # preferred
+  train!(loss, model, data, opt::Optimisers.AbstractRule)  # if you forget setup
+
+  # Provide friendly errors for what happens if you mix these up:
+=#
+import .Optimise: train!
+
+train!(loss, ps::Params, data, opt) = error(
+  """can't mix implict Params with explict state!
+  To use `Flux.params(m)` in `train!`, the 4th argument must be from the old `Flux.Optimise` sub-module.
+  But better to use the new explicit style, in which `m` itself is the 2nd argument.
+  """)
+
+train!(loss, ps::Params, data, opt::Optimisers.AbstractRule) = error(
+  """can't mix implict Params with explict rule from Optimisers.jl
+  To use `Flux.params(m)` in `train!`, the 4th argument must be from the old `Flux.Optimise` sub-module.
+  But better to use the new explicit style, in which `m` itself is the 2nd argument.
+  """)
+
+train!(loss, model, data, opt::Optimise.AbstractOptimiser) = train!(loss, model, data, _old_to_new(opt))
+
+# Next, to use the new `setup` with the still-exported old-style `Adam` etc:
+import .Train: setup
+setup(rule::Optimise.AbstractOptimiser, model) = setup(_old_to_new(rule), model)
+# ... and allow accidental use of `Optimisers.setup` to do the same:
+Optimisers.setup(rule::Optimise.AbstractOptimiser, model) = setup(_old_to_new(rule), model)
+
+for T in [:Descent, :Adam, :Momentum, :Nesterov,
+   	      :AdaGrad, :AdaMax, :AdaDelta, :AMSGrad, :NAdam, :RAdam, :OAdam, :AdaBelief,
+   	      # :InvDecay, :ExpDecay, 
+          ]
+  @eval function _old_to_new(rule::$T)
+    args = map(f -> getfield(rule, f), fieldnames(Optimisers.$T))
+    Optimisers.$T(args...)
+  end
+end
+_old_to_new(rule::Optimiser) = Optimisers.OptimiserChain(map(_old_to_new, rule.os)...)
+const OptimiserChain = Optimise.Optimiser  # lets you use new name with implicit params too.
+_old_to_new(rule::WeightDecay) = Optimisers.WeightDecay(rule.wd)  # called gamma now
+_old_to_new(rule::ClipNorm) = Optimisers.ClipNorm(rule.thesh)  # called omega, and there are more fields 
+_old_to_new(rule::ClipValue) = Optimisers.ClipGrad(rule.thesh)  # called delta now, and struct name differs
+const ClipGrad = Optimise.ClipValue
+_old_to_new(rule::RMSProp) = Optimisers.RMSProp(rule.eta, rule.rho, rule.epsilon)  # RMSProp has no field centred
+
+_old_to_new(rule) = error("Flux.setup does not know how to translate this old-style implicit rule to a new-style Optimisers.jl explicit rule")
+
+# Since `update!` should be called in a loop, it makes less sense to call `setup` for you if you forgot.
+# But let's make sure that such uses give a helpful error:
+import .Optimise: update!
+
+function update!(opt::Optimise.AbstractOptimiser, model, grad)
+  # This error method requires narrowing the main worker method of Flux.Optimise
+  # to accept only arrays. Remove if this causes problems!
+  # update!(opt::Flux.Optimise.AbstractOptimiser, x::AbstractArray, x̄)
+  error("""Invalid input to `update!`.
+    * For the implicit style, this needs `update(::AbstractOptimiser, ::Params, ::Grads)`
+    * For the explicit style, `update(state, model, grad)` needs `state = Flux.setup(opt, model)`.
+    """)
+end
+
+# An easy error to make is to pass result of explicit gradient(...), not gradient(...)[1]
+# Can't catch every case, but can catch many simple Flux models:
+
+function update!(opt, model::Chain, grads::Tuple)
+  # Zygote will make a NamedTuple{(:layers,)} for the gradient of Chain, Diffractor a Tangent
+  @warn """explicit `update!(opt, model, grad)` wants the gradient for the model alone,
+    not the whole tuple from `gradient(m -> loss(m, x, y), model)`. You probably want `grads[1]`."""
+  update!(opt, model, grads[1])
+end
+
+function update!(opt::Optimise.AbstractOptimiser, model::Chain, grads::Tuple)  # ambiguity
+  update!(opt, model, grads[1])  # calls error case "Invalid input" just above
+end
+
+# One more easy error to catch is using explicit gradient with `params(m)`:
+
+function update!(opt::Optimise.AbstractOptimiser, ::Params, grads::Union{Tuple, NamedTuple})
+  error("""can't mix implicit Params with explicit gradients!
+    * For the implicit style, this needs `update(::AbstractOptimiser, ::Params, ::Grads)` with implicit gradient.
+    * For the explicit style, `update(state, model, grad)` needs the model itself, and `state = Flux.setup(opt, model)`.
+    """)
+end
+
+# v0.14 deprecations
+
+# Enable these when 0.14 is released, and delete const ClipGrad = Optimise.ClipValue etc: 
+# Base.@deprecate_binding Optimiser OptimiserChain
+# Base.@deprecate_binding ClipValue ClipGrad
+
+# train!(loss::Function, ps::Zygote.Params, data, opt) = throw(ArgumentError(
+#   """On Flux 0.14, `train!` no longer accepts implicit `Zygote.Params`.
+#   Instead of `train!(loss_xy, Flux.params(model), data, Adam())`
+#   it now needs `opt = Flux.setup(Adam(), model); train!(loss_mxy, model, data, opt)`
+#   where `loss_mxy` accepts the model as its first argument.
+#   """
+# ))

src/optimise/Optimise.jl

@@ -1,7 +1,6 @@
 module Optimise
 
 using LinearAlgebra
-import ArrayInterface
 
 export train!, update!,
 	Descent, Adam, Momentum, Nesterov, RMSProp,

src/optimise/train.jl

@@ -1,20 +1,27 @@
 using ProgressLogging: @progress, @withprogress, @logprogress
 import Zygote: Params, gradient, withgradient
 
+# Add methods to Optimisers.jl's function, so that there is just one Flux.update!
+# for both explicit and implicit parameters.
+import Optimisers.update!
 
 """
     update!(opt, p, g)
     update!(opt, ps::Params, gs)
 
 Perform an update step of the parameters `ps` (or the single parameter `p`)
-according to optimizer `opt`  and the gradients `gs` (the gradient `g`).
+according to optimizer `opt::AbstractOptimiser`  and the gradients `gs` (the gradient `g`).
 
 As a result, the parameters are mutated and the optimizer's internal state may change.
 The gradient could be mutated as well.
+
+!!! note
+    This method for implicit `Params` (and `AbstractOptimiser`) will be removed from Flux 0.14.
+    The explicit method `update!(opt, model, grad)` from Optimisers.jl will remain.
 """
-function update!(opt::AbstractOptimiser, x, x̄)
-  x̄r = ArrayInterface.restructure(x, x̄) # address some cases where Zygote's
-                                          # output are not mutable, see #1510 
+function update!(opt::AbstractOptimiser, x::AbstractArray, x̄)
+  x̄r = copyto!(similar(x̄), x̄)  # Flux.Optimise assumes it can mutate the gradient. This is not
+                               # safe due to aliasing, nor guaranteed to be possible, e.g. Fill.
   x .-= apply!(opt, x, x̄r)
 end
 
@@ -88,6 +95,10 @@ batchmemaybe(x::Tuple) = x
 Uses a `loss` function and training `data` to improve the 
 model's parameters according to a particular optimisation rule `opt`.
 
+!!! note
+    This method with implicit `Params` will be removed from Flux 0.14.
+    It should be replaced with the explicit method `train!(loss, model, data, opt)`.
+
 For each `d in data`, first the gradient of the `loss` is computed like this:
 ```
     gradient(() -> loss(d...), pars)  # if d isa Tuple