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Merge pull request #1013 from trz42/2023.06-grace-2022b-eb490-apps
{2023.06}[2022b,grace] apps originally built with EB 4.9.0
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‎easystacks/software.eessi.io/2023.06/grace/eessi-2023.06-eb-4.9.4-2022b.yml

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@@ -37,3 +37,53 @@ easyconfigs:
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# easyconfigs (via EB 4.9.4) didn't work, and wasn't done for any of the other
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# supported CPU microarchitectures. Hence, we build QE with 4.8.2
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# - QuantumESPRESSO-7.2-foss-2022b.eb
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#
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# from here on built originally with EB 4.9.0
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# includes dependencies Boost/1.81.0 and Boost.MPI/1.81.0 for which we have to
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# use updated easyconfigs (via from-commit) because the download URLs have
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# changed
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#
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# originally built with EB 4.9.0, PR 20298 was included since 4.9.2 and no more
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# updates to it since then
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# - Highway-1.0.3-GCCcore-12.2.0.eb:
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# options:
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# from-pr: 20298
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- Highway-1.0.3-GCCcore-12.2.0.eb
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- SciPy-bundle-2023.02-gfbf-2022b.eb
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# Boost-1.81.0-GCC-12.2.0.eb is a dependency for GDAL and the sources URL for Boost
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# has recently changed by PR 22157
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# see https://github.com/easybuilders/easybuild-easyconfigs/pull/22157
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- Boost-1.81.0-GCC-12.2.0.eb:
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options:
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from-commit: 5bebccf792ccf35a8ee3250bc8fed86dff5d5df9
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- GDAL-3.6.2-foss-2022b.eb
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# originally built with EB 4.9.0, PR 19324 was included since 4.9.1; there were a
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# few additional changes to the easyconfig, hence we use the merge commit for 19324
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# - waLBerla-6.1-foss-2022b.eb:
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# options:
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# from-pr: 19324
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# Boost.MPI-1.81.0-gompi-2022b.eb is a dependency for waLBerla and the sources URL for
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# Boost.MPI has recently changed by PR 22240
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# see https://github.com/easybuilders/easybuild-easyconfigs/pull/22240
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- Boost.MPI-1.81.0-gompi-2022b.eb:
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options:
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from-commit: e610fe1ac5393d1de668a466fdaaea74c580ee03
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- waLBerla-6.1-foss-2022b.eb:
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options:
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from-commit: 11daa230014b22387c28712d2ce93c45618058f6
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- WRF-4.4.1-foss-2022b-dmpar.eb
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# originally built with EB 4.9.0, PR 20086 was included since 4.9.1; there were a
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# few additional changes to the easyconfig, hence we use the merge commit for 20086
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# - ImageMagick-7.1.0-53-GCCcore-12.2.0.eb:
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# options:
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# from-pr: 20086
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- ImageMagick-7.1.0-53-GCCcore-12.2.0.eb:
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options:
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from-commit: a0eff4515ecad4fe37d7c018c95526ad4a777de7
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# originally built with EB 4.9.0, PR 20238 was included since 4.9.1; there were
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# additional changes, particularly addressing CVE 2024-27322 that was included
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# since EB 4.9.2, hence we simply use the easyconfig available with EB 4.9.4
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# - R-4.2.2-foss-2022b.eb:
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# options:
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# from-pr: 20238
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- R-4.2.2-foss-2022b.eb

‎eb_hooks.py

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@@ -749,10 +749,17 @@ def pre_test_hook_exclude_failing_test_Highway(self, *args, **kwargs):
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"""
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Pre-test hook for Highway: exclude failing TestAllShiftRightLanes/SVE_256 test on neoverse_v1
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cfr. https://github.com/EESSI/software-layer/issues/469
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and exclude failing tests
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HwyReductionTestGroup/HwyReductionTest.TestAllSumOfLanes/SVE2_128
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HwyReductionTestGroup/HwyReductionTest.TestAllSumOfLanes/SVE2
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HwyReductionTestGroup/HwyReductionTest.TestAllSumOfLanes/SVE
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on nvidia/grace
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"""
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cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
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if self.name == 'Highway' and self.version in ['1.0.3'] and cpu_target == CPU_TARGET_NEOVERSE_V1:
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self.cfg['runtest'] += ' ARGS="-E TestAllShiftRightLanes/SVE_256"'
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if self.name == 'Highway' and self.version in ['1.0.3'] and cpu_target == CPU_TARGET_NVIDIA_GRACE:
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self.cfg['runtest'] += ' ARGS="-E TestAllSumOfLanes"'
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def pre_test_hook_ignore_failing_tests_ESPResSo(self, *args, **kwargs):
@@ -795,12 +802,60 @@ def pre_test_hook_ignore_failing_tests_SciPybundle(self, *args, **kwargs):
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FAILED scipy/optimize/tests/test_linprog.py::TestLinprogIPSparse::test_bug_6139
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FAILED scipy/optimize/tests/test_linprog.py::TestLinprogIPSparsePresolve::test_bug_6139
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= 2 failed, 54876 passed, 3021 skipped, 223 xfailed, 13 xpassed in 581.85s (0:09:41) =
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In version 2023.02 on grace, 46 failing tests in scipy (versions 1.10.1):
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FAILED ../../linalg/tests/test_basic.py::TestOverwrite::test_pinv - RuntimeWa...
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FAILED ../../linalg/tests/test_basic.py::TestOverwrite::test_pinvh - RuntimeW...
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FAILED ../../linalg/tests/test_matfuncs.py::TestExpM::test_2x2_input - Runtim...
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FAILED ../../optimize/tests/test_linprog.py::TestLinprogIPSparse::test_bug_6139
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FAILED ../../optimize/tests/test_linprog.py::TestLinprogIPSparsePresolve::test_bug_6139
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FAILED ../../optimize/tests/test_zeros.py::test_gh_9608_preserve_array_shape
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[True-True-True-coo_matrix-float32]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[True-True-False-array-float32]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[True-True-False-csr_matrix-float32]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[True-True-False-coo_matrix-float32]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[False-True-True-array-float32]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[False-True-True-csr_matrix-float32]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[False-True-True-coo_matrix-float32]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[True-True-True-array-float32]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-True-False-True-float32-asarray]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[False-True-False-array-float32]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[True-True-True-csr_matrix-float32]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-True-False-True-float32-csr_matrix]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-True-True-True-float32-asarray]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-True-True-True-float32-csr_matrix]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-True-False-True-float32-coo_matrix]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[False-True-False-csr_matrix-float32]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-True-True-True-float32-coo_matrix]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-True-False-True-float32-asarray]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-False-False-True-float32-asarray]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-False-False-True-float32-csr_matrix]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-False-False-True-float32-coo_matrix]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[False-True-False-coo_matrix-float32]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-True-False-True-float32-csr_matrix]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-True-False-True-float32-coo_matrix]
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FAILED ../../sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py::test_tolerance_float32
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-True-True-True-float32-asarray]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-False-False-True-float32-asarray]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-False-False-True-float32-csr_matrix]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-False-False-True-float32-coo_matrix]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-True-True-True-float32-csr_matrix]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-True-True-True-float32-coo_matrix]
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FAILED ../../sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py::test_random_initial_float32
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-False-True-True-float32-asarray]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-False-True-True-float32-csr_matrix]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-False-True-True-float32-coo_matrix]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-False-True-True-float32-asarray]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-False-True-True-float32-csr_matrix]
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FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-False-True-True-float32-coo_matrix]
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FAILED ../../sparse/linalg/_isolve/tests/test_iterative.py::test_precond_dummy
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FAILED ../../sparse/linalg/_eigen/arpack/tests/test_arpack.py::test_symmetric_modes
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= 46 failed, 49971 passed, 2471 skipped, 231 xfailed, 11 xpassed in 65.91s (0:01:05) =
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(in previous versions we were not as strict yet on the numpy/SciPy tests)
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"""
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cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
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scipy_bundle_versions_nv1 = ('2021.10', '2023.02', '2023.07', '2023.11')
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scipy_bundle_versions_a64fx = ('2023.07', '2023.11')
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scipy_bundle_versions_nvidia_grace = ('2023.07', '2023.11')
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scipy_bundle_versions_nvidia_grace = ('2023.02', '2023.07', '2023.11')
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if self.name == 'SciPy-bundle':
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if cpu_target == CPU_TARGET_NEOVERSE_V1 and self.version in scipy_bundle_versions_nv1:
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self.cfg['testopts'] = "|| echo ignoring failing tests"

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