...

Author: Dom Laetsch

lib/BtPlot.py

@@ -82,7 +82,6 @@ def parseCovFile(cov_f):
                     cov_dict[seq_name] = 0.02
                 else:
                     cov_dict[seq_name] = float(cov)
-
             except:
                 BtLog.error('25', cov_f)
     return cov_dict
@@ -402,7 +401,10 @@ def plotScatterCov(self, cov_lib, cov_dict, info_flag, x_label, y_label, scale,
             i += 1
             group_length_array = array(self.stats[group]['length'])
             group_cov_y_array = array([cov_dict[name] for name in self.stats[group]['name']])
+            print len(group_cov_y_array)
             group_cov_x_array = array(self.stats[group]['covs'][cov_lib])
+            print len(group_cov_x_array)
+            print len([l for l in self.stats[group]['length'] if l >= 100 else pass])
             # calculate values for legend
             if len(group_length_array) > 0:
                 group_span_in_mb = round(self.stats[group]['span_visible']/1000000, 2)