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lines changed Original file line number Diff line number Diff line change @@ -51,7 +51,8 @@ $ ./blobtools -h
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```
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## Doc
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- - blobtools : main executable
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+ ### blobtools
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+ - main executable
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```
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usage: blobtools <command> [<args>...] [--help]
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@@ -63,7 +64,8 @@ commands:
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-h --help show this
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```
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- - blobtools create : create a BlobDb JSON file
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+ ### blobtools create
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+ - create a BlobDb JSON file
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```
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usage: blobtools create -i FASTA [-y FASTATYPE] [-o OUTFILE] [--title TITLE]
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[-b BAM...] [-s SAM...] [-a CAS...] [-c COV...]
@@ -95,7 +97,8 @@ usage: blobtools create -i FASTA [-y FASTATYPE] [-o OUTFILE] [--title TITLE]
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--title TITLE Title of BlobDB [default: FASTA)
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```
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- - blobtools view : generate table output from a blobDB file
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+ ### blobtools view
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+ - generate table output from a blobDB file
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```
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usage: blobtools view -i <BLOBDB> [-r <TAXRULE>] [--rank <TAXRANK>...] [--hits]
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[--list <LIST>] [--out <OUT>]
@@ -115,7 +118,8 @@ usage: blobtools view -i <BLOBDB> [-r <TAXRULE>] [--rank <TAXRANK>...] [--hit
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-b, --hits Displays taxonomic hits from tax files
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```
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- blobtools plot : generate a blobplot from a blobDB file
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+ ### blobtools plot
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+ - generate a blobplot from a blobDB file
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```
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usage: blobtools plot -i BLOBDB [-p INT] [-l INT] [-c] [-n] [-s]
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[-r RANK] [-x TAXRULE] [--label GROUPS...]
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