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Dom LaetschDom Laetsch
Dom Laetsch
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Dom Laetsch
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Changed order of parsing in blobtools create
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create.py

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -54,8 +54,6 @@
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# Parse FASTA
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blobDb.parseFasta(fasta_f, fasta_type)
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# Parse coverage
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blobDb.parseCovs(cov_libs)
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# Parse Tax
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blobDb.parseHits(hit_libs)
@@ -72,6 +70,9 @@
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print BtLog.status_d['6'] % ",".join(taxrules)
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blobDb.computeTaxonomy(taxrules, nodesDB)
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# Parse coverage
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blobDb.parseCovs(cov_libs)
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# Generating BlobDB and writing to file
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print BtLog.status_d['7'] % out_f
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BtIO.writeJson(blobDb.dump(), out_f)

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