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Commit 60f8448

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Fixed bug
- Happens when COV file does contain names that do not occur in the assembly
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bloblib/BtIO.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -481,7 +481,7 @@ def parseCov(infile, set_of_blobs):
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seqs_parsed += 1
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name, read_cov, base_cov = match.group(1), int(match.group(2)), float(match.group(3))
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if name not in set_of_blobs:
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print BtLog.warn_d['2'] % (name, infile)
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print BtLog.warn_d['2'] % (name)
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else:
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read_cov_dict[name] = read_cov
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base_cov_dict[name] = base_cov

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