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1 parent a70507a commit 23e42d9Copy full SHA for 23e42d9
lib/BtIO.py
@@ -145,9 +145,9 @@ def parseCovFromHeader(fasta_type, header ):
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elif fasta_type == 'platanus':
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temp = header.rstrip("\n").split("_")
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if len(temp) >= 3:
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- return float(temp[3].replace("cov", "")) # scaffold/scaffoldBubble/contig
+ return float(temp[2].replace("cov", "")) # scaffold/scaffoldBubble/contig
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else:
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- return float(temp[2].replace("cov", "")) # gapClosed
+ return float(temp[1].replace("cov", "")) # gapClosed
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pass
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