...

Author: Dom Laetsch

lib/BtCore.py

@@ -315,8 +315,7 @@ def parseCovs(self, covLibObjs):
                 pass        
             covLib.mean_cov = covLib.cov_sum/self.seqs
             if covLib.cov_sum == 0.0:
-                print BtLog.error_d['26'] % (covLib.f)
-            print covLib.cov_sum
+                BtLog.error('26', covLib.f)
             self.covLibs[covLib.name] = covLib
 
 

lib/BtLog.py

@@ -22,7 +22,7 @@ def error(message, *argv):
 def progress(iteration, steps, max_value):
     if int(iteration == max_value):
         sys.stdout.write('\r')
-        print "[PROGRESS]\t: %d%%\n" % (100)
+        print "[PROGRESS]\t: %d%%" % (100)
     elif int(iteration) % int(steps) == 0:
         sys.stdout.write('\r')
         print "[PROGRESS]\t: %d%%" % (float(int(iteration)/int(max_value))*100),