...

Author: Dom Laetsch

lib/BtIO.py

@@ -203,7 +203,6 @@ def readCas(infile, order_of_blobs):
                 except:
                     pass
             BtLog.progress(seqs_parsed, progress_unit, seqs_total)
-        BtLog.progress(seqs_total, progress_unit, seqs_total)
     return cov_dict, reads_total, reads_mapped, read_cov_dict
 
 def readTax(infile, set_of_blobs):

lib/BtPlot.py

@@ -596,6 +596,12 @@ def plotBlobs(self, cov_lib, info_flag):
                     print BtLog.info_d['0'] % (group, fmt_seqs, fmt_span, fmt_n50)
                 legend_handles.append(Line2D([0], [0], linewidth = 0.5, linestyle="none", marker="o", alpha=1, markersize=24, markerfacecolor=colour))
                 legend_labels.append(label)
+                print group
+                print group_gc_array
+                print group_cov_array
+                print weights_array
+                print top_bins
+                print right_bins
                 if (self.hist_type == "span"):
                     axHistx.hist(group_gc_array, weights=weights_array, color = colour, bins = top_bins, histtype='step', lw = 3)
                     axHisty.hist(group_cov_array, weights=weights_array, color = colour, bins = right_bins, histtype='step', orientation='horizontal', lw = 3)