Module: Umi count

Count UMIs per gene per cell.

• Internal name : umi_count

• Avalaible : local mode

• Input Ports :

  • mapper_results_sam: alignment files (default: sam files).

• Output Ports :

  • expression_matrix_tsv: matrix of the number of UMI counts per cell and per gene.

• Optional parameters : none (to be updated)

More info: https://github.com/CGATOxford/UMI-tools/blob/master/doc/Single_cell_tutorial.md - look for "umi count"