CliMA · navidcy · Oct 9, 2025 · Oct 9, 2025 · Oct 9, 2025 · Oct 9, 2025
diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
@@ -1,5 +1,5 @@
 env:
-  JULIA_VERSION: "1.10.10"
+  JULIA_VERSION: "1.12.0"
   BUILDKITE_HOME: "/var/lib/buildkite-agent"
   JULIA_DEPOT_PATH: "$BUILDKITE_HOME/.julia-oceananigans"
   JULIA_PKG_SERVER_REGISTRY_PREFERENCE: eager
@@ -79,29 +79,30 @@ steps:
           - "CPU"
           - "GPU"
         group:
+          - "🐇 unit"
+          # - "👻 abstract_operations"
+          # - "🕊 poisson_solvers_1"
           - "🦖 poisson_solvers_2"
+          # - "🦤 general_solvers"
+          # - "🎣 turbulence_closures"
+          # - "🦀 time_stepping_1"
+          # - "🦈 time_stepping_2"
+          # - "🦟 time_stepping_3"
+          # - "🐫 nonhydrostatic_regression"
+          # - "🐙 hydrostatic_free_surface"
+          # - "🫐 tripolar_grid"
+          # - "🥑 vertical_coordinate"
+          # - "🙈 hydrostatic_regression"
+          # - "🦢 shallow_water"
+          # - "🐳 simulation"
+          # - "🍂 lagrangian_particles"
+          # - "🧅 multi_region"
+          # - "🦧 scripts"
+          # - "👺 enzyme"
+          # - "🍱 xesmf"
+          # - "👹 reactant_1"
           - "🎭 reactant_2"
-          - "🐇 unit"
-          - "👻 abstract_operations"
-          - "🕊 poisson_solvers_1"
-          - "🦤 general_solvers"
-          - "🎣 turbulence_closures"
-          - "🦀 time_stepping_1"
-          - "🦈 time_stepping_2"
-          - "🦟 time_stepping_3"
-          - "🐫 nonhydrostatic_regression"
-          - "🐙 hydrostatic_free_surface"
-          - "🫐 tripolar_grid"
-          - "🥑 vertical_coordinate"
-          - "🙈 hydrostatic_regression"
-          - "🦢 shallow_water"
-          - "🐳 simulation"
-          - "🍂 lagrangian_particles"
-          - "🧅 multi_region"
-          - "🦧 scripts"
-          - "👺 enzyme"
-          - "🍱 xesmf"
-          - "👹 reactant_1"
+
     retry:
       automatic:
         - exit_status: 1

diff --git a/Project.toml b/Project.toml
@@ -92,7 +92,7 @@ OffsetArrays = "1.4"
 OrderedCollections = "1.1"
 Printf = "1.9"
 Random = "1.9"
-Reactant = "0.2.162"
+Reactant = "0.2.169"
 ReactantCore = "0.1"
 Rotations = "1.0"
 SeawaterPolynomials = "0.3.9"
@@ -110,14 +110,14 @@ AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e"
 CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
 CUDA_Runtime_jll = "76a88914-d11a-5bdc-97e0-2f5a05c973a2"
 DataDeps = "124859b0-ceae-595e-8997-d05f6a7a8dfe"
-Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9"
+# Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9"
 MPIPreferences = "3da0fdf6-3ccc-4f1b-acd9-58baa6c99267"
 Metal = "dde4c033-4e86-420c-a63e-0dd931031962"
-Reactant = "3c362404-f566-11ee-1572-e11a4b42c853"
+# Reactant = "3c362404-f566-11ee-1572-e11a4b42c853"
 SafeTestsets = "1bc83da4-3b8d-516f-aca4-4fe02f6d838f"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 TimesDates = "bdfc003b-8df8-5c39-adcd-3a9087f5df4a"
 oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b"
 
 [targets]
-test = ["AMDGPU", "CUDA", "oneAPI", "DataDeps", "SafeTestsets", "Test", "Enzyme", "Reactant", "Metal", "XESMF", "CUDA_Runtime_jll", "MPIPreferences", "TimesDates", "NCDatasets"]
+test = ["AMDGPU", "CUDA", "oneAPI", "DataDeps", "SafeTestsets", "Test", "Metal", "XESMF", "CUDA_Runtime_jll", "MPIPreferences", "TimesDates", "NCDatasets"]
diff --git a/docs/make.jl b/docs/make.jl
@@ -1,7 +1,7 @@
-using Distributed
-Distributed.addprocs(2)
+# using Distributed
+# Distributed.addprocs(2)
 
-@everywhere begin
+# @everywhere begin
     using Documenter
     using DocumenterCitations
     using Literate
@@ -49,11 +49,12 @@ Distributed.addprocs(2)
         "one_dimensional_diffusion.jl",
         "internal_wave.jl",
     ]
-end
+# end
 
-@info string("Executing the examples using ", Distributed.nprocs(), " processes")
+# @info string("Executing the examples using ", Distributed.nprocs(), " processes")
 
-Distributed.pmap(1:length(example_scripts)) do n
+# Distributed.pmap(1:length(example_scripts)) do n
+for n in 1:length(example_scripts)
     example = example_scripts[n]
     example_filepath = joinpath(EXAMPLES_DIR, example)
     withenv("JULIA_DEBUG" => "Literate") do
@@ -65,7 +66,7 @@ Distributed.pmap(1:length(example_scripts)) do n
     end
 end
 
-Distributed.rmprocs()
+# Distributed.rmprocs()
 
 #####
 ##### Organize page hierarchies

diff --git a/examples/internal_tide.jl b/examples/internal_tide.jl
@@ -43,7 +43,7 @@ width = 20kilometers
 hill(x) = h₀ * exp(-x^2 / 2width^2)
 bottom(x) = - H + hill(x)
 
-grid = ImmersedBoundaryGrid(underlying_grid, PartialCellBottom(bottom))
+grid = ImmersedBoundaryGrid(underlying_grid, GridFittedBottom(bottom))
 
 # Let's see how the domain with the bathymetry is.
 

diff --git a/src/Models/HydrostaticFreeSurfaceModels/update_hydrostatic_free_surface_model_state.jl b/src/Models/HydrostaticFreeSurfaceModels/update_hydrostatic_free_surface_model_state.jl
@@ -60,9 +60,9 @@ function mask_immersed_model_fields!(model, grid)
     η = displacement(model.free_surface)
     fields_to_mask = merge(model.auxiliary_fields, prognostic_fields(model))
 
-    foreach(fields_to_mask) do field
-        if field !== η
-            mask_immersed_field!(field)
+    foreach(keys(fields_to_mask)) do key
+        if key != :η
+            @inbounds mask_immersed_field!(fields_to_mask[key])
         end
     end
     mask_immersed_field_xy!(η, k=size(grid, 3)+1)

diff --git a/src/MultiRegion/multi_region_field.jl b/src/MultiRegion/multi_region_field.jl
@@ -6,7 +6,7 @@ using Oceananigans.OutputWriters: output_indices
 
 using Base: @propagate_inbounds
 
-import Oceananigans.BoundaryConditions: regularize_field_boundary_conditions
+import Oceananigans.BoundaryConditions: regularize_field_boundary_conditions, FieldBoundaryConditions
 import Oceananigans.Diagnostics: hasnan
 import Oceananigans.DistributedComputations: reconstruct_global_field, CommunicationBuffers
 import Oceananigans.Fields: set!, compute!, compute_at!, interior, communication_buffers,

diff --git a/src/Oceananigans.jl b/src/Oceananigans.jl
@@ -121,10 +121,10 @@ using DocStringExtensions
 using FFTW
 
 function __init__()
-    if VERSION >= v"1.11.0"
-        @warn """You are using Julia v1.11 or later!"
-                 Oceananigans is currently tested on Julia v1.10."
-                 If you find issues with Julia v1.11 or later,"
+    if VERSION >= v"1.13.0"
+        @warn """You are using Julia v1.13 or later!"
+                 Oceananigans is currently tested on Julia v1.12."
+                 If you find issues with Julia v1.13 or later,"
                  please report at https://github.com/CliMA/Oceananigans.jl/issues/new"""
 
     end

diff --git a/test/test_init.jl b/test/test_init.jl
@@ -1,4 +1,4 @@
-using Enzyme
+# using Enzyme
 using CUDA
 using Metal
 using AMDGPU