Remove ClimaLandSimulations

Work in progress

[skip ci][ci skip]

Author: Sbozzolo

.buildkite/pipeline.yml

@@ -31,10 +31,6 @@ steps:
       - "julia --project=test -e 'using Pkg; Pkg.develop(;path=\".\"); Pkg.add(\"MPI\"); Pkg.add(\"CUDA\"); Pkg.instantiate(;verbose=true)'"
       - "julia --project=test -e 'using Pkg; Pkg.status()'"
 
-      - echo "--- Instantiate lib/ClimaLandSimulations"
-      - "julia --project=lib/ClimaLandSimulations -e 'using Pkg; Pkg.develop(;path=\".\"); Pkg.instantiate(;verbose=true)'"
-      - "julia --project=lib/ClimaLandSimulations -e 'using Pkg; Pkg.status()'"
-
     agents:
       slurm_gpus: 1
       # Ensures that we have all the 8 tasks on the same node
@@ -135,12 +131,6 @@ steps:
         env:
           CLIMACOMMS_DEVICE: "CUDA"
 
-  - group: "ClimaLandSimulations"
-    steps:
-      - label: "Ozark figures Makie"
-        command: "julia --color=yes --project=lib/ClimaLandSimulations lib/ClimaLandSimulations/experiments/ozark.jl"
-        artifact_paths: "figures/*pdf"
-
   - group: "CPU: global bucket"
     steps:
       - label: "Global Bucket on CPU (functional albedo)"

.github/workflows/ClimaLandSimulations.yml

@@ -6,7 +6,6 @@
 - experiments: contains simple runs of `ClimaLand` models. Most of these experiments is run as part of our CI.
 - src: contains the code of `ClimaLand` models.
 - ext: contains a package extension for Neural Snow and an extension with constructors for model parameters
-- lib: contains two packages that extend ClimaLand functionality: ClimaLandSimulations and ClimaLandDashboards
 - test: contains [unit tests](https://en.wikipedia.org/wiki/Unit_testing), which are meant to ensure small pieces of ClimaLand source code work as intended before merging pull requests.
 
 and 3 GitHub actions folders. GitHub actions are `.yml` files that define workflows that are run at each pull request.
@@ -84,20 +83,6 @@ As well as two files:
 - ClimaLand.jl: This file is the main Julia module of `ClimaLand.jl` repository. It contains all functions defined in `/src` in a nested way, for example `ClimaLand.X`, `ClimaLand.Soil.X`, `ClimaLand.Canopy.X`, etc. When a Julia user install and uses ClimaLand via `]add ClimaLand, using ClimaLand`, they are loading those functions, and are ready to use ClimaLand codebase.
 - Artifacts.jl: Contains functions that return the path of the given artifact name in the current context
 
-## /lib folder
-
-This folder contains a subfolder, `/ClimaLandSimulations`, which contains a library of methods
-to easily and conveniently run ClimaLand at a variety of sites and globally. There are 3 subfolders:
-
-- experiments: This folder contains scripts to run ClimaLand at a fluxnet site using ClimaLandSimulations
-- src: Contains source code for the ClimaLandSimulations package. There are 3 subfolders and
-1 file.
-  - Dashboards: Contains scripts to create dashboards for running simulations at fluxnet sites
-  - Fluxnet: Contains scripts to setup a ClimaLand simulation at a fluxnet site
-  - utilities: Contains utilities used in setup of ClimaLand simulation at a fluxnet sites
-
-- test: Contains tests for the ClimaLandSimulations package
-
 ## /ext folder
 This folder has one subfolder, `/neural_snow`, which contains tools to create the neural network
 for snow and process its data. There are also two files
@@ -121,4 +106,4 @@ subfolders:
 - aqua.jl: Contains code quality assurance tests tha use Aqua.jl
 - Project.toml: Specifies dependencies needed for testing
 - runtests.jl: When `test` is ran from the package manager, this file is ran. It can also be
-manually ran using the `test` environment. This file runs all the other test scripts.
+manually ran using the `test` environment. This file runs all the other test scripts.

docs/src/folderstructure.md

@@ -12,12 +12,13 @@
 # 3. The prior distribution of these parameters.
 
 # ## Load packages
-import ClimaLandSimulations.Fluxnet as CLS # to run the model
 import EnsembleKalmanProcesses as EKP # to perform the calibration
 import Random # to use the same seed each run in the tutorial, optional
 import Logging
 Logging.disable_logging(Logging.Warn); # hide julia warnings
 
+include("run_fluxnet.jl")
+
 # ## Write a function returning our model LHF output given the parameters to calibrate
 function Ozark_LHF(params) # params is a 2 element Array
     g1, sc, pc = params