Merge branch 'release/next-djangole'

Author: sloria

.docker-compose.mfr.env

@@ -7,4 +7,16 @@ SERVER_CONFIG_HMAC_SECRET=changeme
 SERVER_CONFIG_ADDRESS=0.0.0.0
 SERVER_CONFIG_ALLOWED_PROVIDER_DOMAINS='http://192.168.168.167:5000/ http://192.168.168.167:7777/'
 
+UNOCONV_PORT_2002_TCP_ADDR=192.168.168.167
+
+# Related settings from MFR  mfr/extensions/settings.py
+# These settings are used for changing URI in templates for renderers that download from 
+# waterbutler in template. e.g. 192.168.168.167 -> localhost
+# LOCAL_DEVELOPMENT = config.get_bool('LOCAL_DEVELOPMENT', 0)
+# DOCKER_LOCAL_HOST = config.get('DOCKER_LOCAL_HOST', '192.168.168.167')
+# LOCAL_HOST = config.get('LOCAL_HOST', 'localhost')
+
+# Indicates use of local docker development setup
+EXTENSION_CONFIG_LOCAL_DEVELOPMENT=1
+
 #PYTHONUNBUFFERED=0 # This when set to 0 will allow print statements to be visible in the Docker logs

.pyup.yml

@@ -0,0 +1,3 @@
+pin: True
+# schedule: "every week"
+search: True

.travis.yml

@@ -23,7 +23,7 @@ env:
     - WHEELHOUSE="$HOME/.cache/wheelhouse"
     - LIBXML2_DEB="libxml2-dbg_2.9.1+dfsg1-3ubuntu4.9_amd64.deb"
     - POSTGRES_DEB="postgresql-9.6_9.6.3-1.pgdg12.4+1_amd64.deb"
-    - ELASTICSEARCH_ARCHIVE="elasticsearch-1.5.0.tar.gz"
+    - ELASTICSEARCH_ARCHIVE="elasticsearch-2.4.5.tar.gz"
     - LIBJEMALLOC_DEB="libjemalloc1_3.5.1-2_amd64.deb"
     - LIBPCRE_DEB="libpcre3_8.31-2ubuntu2.3_amd64.deb"
     # - VARNISH_DEB="varnish_4.1.0-1~trusty_amd64.deb"

CHANGELOG

@@ -2,6 +2,23 @@
 Changelog
 *********
 
+0.125.0 (2017-12-05)
+====================
+
+- Add GitLab addon
+- Add OneDrive addon
+- Upgrade a number of Python dependencies
+- Use django-celery-beat for managing periodic tasks
+- Optimizations for files grid and adding contributors
+- APIv2 optimizations
+- Admin: Add custom taxonomy UI
+- Quick files UI on profile pages
+- APIv2 immediately returns preprint DOIs
+- Add `created` and `modified` fields to all models
+- Address Django deprecation warnings
+- Remove modularmodm as a dependency
+- Remove redundant osf.utils.auth module
+
 0.124.0 (2017-11-13)
 ====================
 

Dockerfile

@@ -103,8 +103,10 @@ COPY ./addons/dropbox/requirements.txt ./addons/dropbox/
 #COPY ./addons/figshare/requirements.txt ./addons/figshare/
 #COPY ./addons/forward/requirements.txt ./addons/forward/
 COPY ./addons/github/requirements.txt ./addons/github/
+COPY ./addons/gitlab/requirements.txt ./addons/gitlab/
 #COPY ./addons/googledrive/requirements.txt ./addons/googledrive/
 COPY ./addons/mendeley/requirements.txt ./addons/mendeley/
+COPY ./addons/onedrive/requirements.txt /code/addons/onedrive/
 #COPY ./addons/osfstorage/requirements.txt ./addons/osfstorage/
 COPY ./addons/owncloud/requirements.txt ./addons/owncloud/
 COPY ./addons/s3/requirements.txt ./addons/s3/
@@ -152,8 +154,10 @@ COPY ./addons/dropbox/static/ ./addons/dropbox/static/
 COPY ./addons/figshare/static/ ./addons/figshare/static/
 COPY ./addons/forward/static/ ./addons/forward/static/
 COPY ./addons/github/static/ ./addons/github/static/
+COPY ./addons/gitlab/static/ ./addons/gitlab/static/
 COPY ./addons/googledrive/static/ ./addons/googledrive/static/
 COPY ./addons/mendeley/static/ ./addons/mendeley/static/
+COPY ./addons/onedrive/static/ /code/addons/onedrive/static/
 COPY ./addons/osfstorage/static/ ./addons/osfstorage/static/
 COPY ./addons/owncloud/static/ ./addons/owncloud/static/
 COPY ./addons/s3/static/ ./addons/s3/static/

addons.json

@@ -6,10 +6,12 @@
         "figshare",
         "forward",
         "github",
+        "gitlab",
         "mendeley",
         "zotero",
         "osfstorage",
         "owncloud",
+        "onedrive",
         "s3",
         "twofactor",
         "wiki",
@@ -24,7 +26,9 @@
         "figshare": "partial",
         "forward": "full",
         "googledrive": "partial",
+        "onedrive": "partial",
         "github": "partial",
+        "gitlab": "partial",
         "owncloud": "partial",
         "s3": "partial",
         "wiki": "full",
@@ -37,14 +41,17 @@
         "dropbox",
         "figshare",
         "github",
+        "gitlab",
         "googledrive",
         "owncloud",
         "s3",
-        "bitbucket"
+        "bitbucket",
+        "onedrive"
     ],
     "addons_based_on_ids": [
         "osfstorage",
-        "box"
+        "box",
+        "onedrive"
     ],
     "addons_description": {
         "box": "Box is a file storage add-on. Connect your Box account to an OSF project to interact with files hosted on Box via the OSF.",
@@ -53,6 +60,7 @@
         "figshare": "Figshare is an online digital repository. Connect your figshare account to share your figshare files along with other materials in your OSF project.",
         "forward": "The External Link add-on allows you to provide a link to a website outside of the OSF.",
         "github": "GitHub is a web-based Git repository hosting service. Connect your GitHub repo to your OSF project to share your code alongside other materials in your OSF project.",
+        "gitlab": "GitLab is an open-source web-based Git repository hosting tool and service. Connect your GitLab repo to your OSF project to share your code alongside other materials in your OSF project.",
         "mendeley": "Mendeley is a reference management tool. Connecting Mendeley folders to OSF projects allows you and others to view, copy, and download citations that are relevant to your project from the Project Overview page.",
         "zotero": "Zotero is a reference management tool. Connecting Zotero folders to OSF projects allows you and others to view, copy, and download citations that are relevant to your project from the Project Overview page.",
         "osfstorage": "OSF Storage is the default storage provider for OSF projects.",
@@ -61,19 +69,22 @@
         "twofactor": "Two-factor authentication is a security add-on. By using two-factor authentication, you'll protect your OSF account with both your password and your mobile phone.",
         "wiki": "The wiki is a versatile communication tool. Wikis can be used to explain the main points of your project and can contain information like lab notes or contact information.",
         "googledrive": "Google Drive is a file storage add-on. Connect your Google Drive account to an OSF project to interact with files hosted on Google Drive via the OSF.",
-        "bitbucket": "Bitbucket is a web-based Git repository hosting service. Connect your Bitbucket repo to your OSF project to share your code alongside other materials in your OSF project."
+        "bitbucket": "Bitbucket is a web-based Git repository hosting service. Connect your Bitbucket repo to your OSF project to share your code alongside other materials in your OSF project.",
+        "onedrive": "Microsoft OneDrive is a file storage add-on. Connect your Microsoft OneDrive account to an OSF project to interact with files hosted on Microsoft OneDrive via the OSF."
     },
     "addons_url": {
         "box": "http://www.box.com",
         "dataverse": "https://dataverse.harvard.edu/",
         "dropbox": "http://www.dropbox.com",
         "figshare": "http://www.figshare.com",
         "github": "http://www.github.com",
+        "gitlab": "https://www.gitlab.com",
         "mendeley": "http://www.mendeley.com",
         "owncloud": "https://owncloud.org/",
         "zotero": "http://www.zotero.org",
         "s3": "https://aws.amazon.com/s3/",
         "googledrive": "https://drive.google.com",
-        "bitbucket": "https://bitbucket.org/"
+        "bitbucket": "https://bitbucket.org/",
+        "onedrive": "https://onedrive.live.com"
     }
 }

addons/base/models.py

@@ -84,7 +84,8 @@ def on_delete(self):
 
 
 class BaseUserSettings(BaseAddonSettings):
-    owner = models.OneToOneField(OSFUser, blank=True, null=True, related_name='%(app_label)s_user_settings')
+    owner = models.OneToOneField(OSFUser, related_name='%(app_label)s_user_settings',
+                                 blank=True, null=True, on_delete=models.CASCADE)
 
     class Meta:
         abstract = True
@@ -347,7 +348,8 @@ def on_delete(self):
 
 
 class BaseNodeSettings(BaseAddonSettings):
-    owner = models.OneToOneField(AbstractNode, null=True, blank=True, related_name='%(app_label)s_node_settings')
+    owner = models.OneToOneField(AbstractNode, related_name='%(app_label)s_node_settings',
+                                 null=True, blank=True, on_delete=models.CASCADE)
 
     class Meta:
         abstract = True
@@ -540,7 +542,7 @@ class GenericRootNode(object):
     name = ''
 
 
-class BaseStorageAddon(BaseModel):
+class BaseStorageAddon(object):
     """
     Mixin class for traversing file trees of addons with files
     """
@@ -607,7 +609,8 @@ class BaseOAuthNodeSettings(BaseNodeSettings):
     # TODO: Validate this field to be sure it matches the provider's short_name
     # NOTE: Do not set this field directly. Use ``set_auth()``
     external_account = models.ForeignKey(ExternalAccount, null=True, blank=True,
-                                         related_name='%(app_label)s_node_settings')
+                                         related_name='%(app_label)s_node_settings',
+                                         on_delete=models.CASCADE)
 
     # NOTE: Do not set this field directly. Use ``set_auth()``
     # user_settings = fields.AbstractForeignField()

addons/bitbucket/migrations/0002_auto_20170808_1140.py

@@ -0,0 +1,40 @@
+# -*- coding: utf-8 -*-
+# Generated by Django 1.11.2 on 2017-08-08 16:40
+from __future__ import unicode_literals
+import datetime
+import pytz
+
+from django.db import migrations
+import django_extensions.db.fields
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ('addons_bitbucket', '0001_initial'),
+    ]
+
+    operations = [
+        migrations.AddField(
+            model_name='nodesettings',
+            name='created',
+            field=django_extensions.db.fields.CreationDateTimeField(auto_now_add=True, default=datetime.datetime(1970, 1, 1, 0, 0, tzinfo=pytz.utc), verbose_name='created'),
+            preserve_default=False,
+        ),
+        migrations.AddField(
+            model_name='nodesettings',
+            name='modified',
+            field=django_extensions.db.fields.ModificationDateTimeField(auto_now=True, verbose_name='modified'),
+        ),
+        migrations.AddField(
+            model_name='usersettings',
+            name='created',
+            field=django_extensions.db.fields.CreationDateTimeField(auto_now_add=True, default=datetime.datetime(1970, 1, 1, 0, 0, tzinfo=pytz.utc), verbose_name='created'),
+            preserve_default=False,
+        ),
+        migrations.AddField(
+            model_name='usersettings',
+            name='modified',
+            field=django_extensions.db.fields.ModificationDateTimeField(auto_now=True, verbose_name='modified'),
+        ),
+    ]

addons/bitbucket/models.py

@@ -80,7 +80,7 @@ def fetch_access_token(self, force_refresh=False):
         return self.account.oauth_key
 
 
-class UserSettings(BaseStorageAddon, BaseOAuthUserSettings):
+class UserSettings(BaseOAuthUserSettings):
     """Stores user-specific bitbucket information
 
     Quirks::
@@ -101,14 +101,14 @@ def public_id(self):
         return None
 
 
-class NodeSettings(BaseStorageAddon, BaseOAuthNodeSettings):
+class NodeSettings(BaseOAuthNodeSettings, BaseStorageAddon):
     oauth_provider = BitbucketProvider
     serializer = BitbucketSerializer
 
     user = models.TextField(blank=True, null=True)
     repo = models.TextField(blank=True, null=True)
     hook_id = models.TextField(blank=True, null=True)
-    user_settings = models.ForeignKey(UserSettings, null=True, blank=True)
+    user_settings = models.ForeignKey(UserSettings, null=True, blank=True, on_delete=models.CASCADE)
 
     _api = None
 

addons/box/migrations/0003_auto_20170713_1125.py

@@ -0,0 +1,40 @@
+# -*- coding: utf-8 -*-
+# Generated by Django 1.11.2 on 2017-07-13 16:25
+from __future__ import unicode_literals
+import pytz
+
+import datetime
+from django.db import migrations
+import django_extensions.db.fields
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ('addons_box', '0002_auto_20170323_1534'),
+    ]
+
+    operations = [
+        migrations.AddField(
+            model_name='nodesettings',
+            name='created',
+            field=django_extensions.db.fields.CreationDateTimeField(auto_now_add=True, default=datetime.datetime(1970, 1, 1, 0, 0, tzinfo=pytz.utc), verbose_name='created'),
+            preserve_default=False,
+        ),
+        migrations.AddField(
+            model_name='nodesettings',
+            name='modified',
+            field=django_extensions.db.fields.ModificationDateTimeField(auto_now=True, verbose_name='modified'),
+        ),
+        migrations.AddField(
+            model_name='usersettings',
+            name='created',
+            field=django_extensions.db.fields.CreationDateTimeField(auto_now_add=True, default=datetime.datetime(1970, 1, 1, 0, 0, tzinfo=pytz.utc), verbose_name='created'),
+            preserve_default=False,
+        ),
+        migrations.AddField(
+            model_name='usersettings',
+            name='modified',
+            field=django_extensions.db.fields.ModificationDateTimeField(auto_now=True, verbose_name='modified'),
+        ),
+    ]

addons/box/models.py

@@ -99,7 +99,7 @@ class NodeSettings(BaseOAuthNodeSettings, BaseStorageAddon):
     folder_id = models.TextField(null=True, blank=True)
     folder_name = models.TextField(null=True, blank=True)
     folder_path = models.TextField(null=True, blank=True)
-    user_settings = models.ForeignKey(UserSettings, null=True, blank=True)
+    user_settings = models.ForeignKey(UserSettings, null=True, blank=True, on_delete=models.CASCADE)
 
     _api = None
 

addons/dataverse/migrations/0003_auto_20170713_1125.py

@@ -0,0 +1,40 @@
+# -*- coding: utf-8 -*-
+# Generated by Django 1.11.2 on 2017-07-13 16:25
+from __future__ import unicode_literals
+import pytz
+
+import datetime
+from django.db import migrations
+import django_extensions.db.fields
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ('addons_dataverse', '0002_auto_20170323_1534'),
+    ]
+
+    operations = [
+        migrations.AddField(
+            model_name='nodesettings',
+            name='created',
+            field=django_extensions.db.fields.CreationDateTimeField(auto_now_add=True, default=datetime.datetime(1970, 1, 1, 0, 0, tzinfo=pytz.utc), verbose_name='created'),
+            preserve_default=False,
+        ),
+        migrations.AddField(
+            model_name='nodesettings',
+            name='modified',
+            field=django_extensions.db.fields.ModificationDateTimeField(auto_now=True, verbose_name='modified'),
+        ),
+        migrations.AddField(
+            model_name='usersettings',
+            name='created',
+            field=django_extensions.db.fields.CreationDateTimeField(auto_now_add=True, default=datetime.datetime(1970, 1, 1, 0, 0, tzinfo=pytz.utc), verbose_name='created'),
+            preserve_default=False,
+        ),
+        migrations.AddField(
+            model_name='usersettings',
+            name='modified',
+            field=django_extensions.db.fields.ModificationDateTimeField(auto_now=True, verbose_name='modified'),
+        ),
+    ]

addons/dataverse/models.py

@@ -7,7 +7,7 @@
 from framework.auth.decorators import Auth
 from framework.exceptions import HTTPError
 from osf.models.files import File, Folder, FileVersion, BaseFileNode
-from osf.utils.auth import _get_current_user
+from framework.auth.core import _get_current_user
 from addons.base import exceptions
 from addons.dataverse.client import connect_from_settings_or_401
 from addons.dataverse.serializer import DataverseSerializer
@@ -74,7 +74,7 @@ class UserSettings(BaseOAuthUserSettings):
     serializer = DataverseSerializer
 
 
-class NodeSettings(BaseStorageAddon, BaseOAuthNodeSettings):
+class NodeSettings(BaseOAuthNodeSettings, BaseStorageAddon):
     oauth_provider = DataverseProvider
     serializer = DataverseSerializer
 
@@ -83,7 +83,7 @@ class NodeSettings(BaseStorageAddon, BaseOAuthNodeSettings):
     dataset_doi = models.TextField(blank=True, null=True)
     _dataset_id = models.TextField(blank=True, null=True)
     dataset = models.TextField(blank=True, null=True)
-    user_settings = models.ForeignKey(UserSettings, null=True, blank=True)
+    user_settings = models.ForeignKey(UserSettings, null=True, blank=True, on_delete=models.CASCADE)
 
     @property
     def folder_name(self):