standardize data in FLOP

Author: mwien

README.md

@@ -12,7 +12,7 @@ pip install flopsearch
 In R, flopsearch can be installed directly from Github:
 
 ``` r
-install.packages("https://github.com/CausalDisco/flopsearch/releases/download/v0.1.1/flopsearch.tar.gz")
+install.packages("https://github.com/CausalDisco/flopsearch/releases/download/v0.1.2/flopsearch.tar.gz")
 ```
 
 This requires a working installation of the [Rust toolchain](https://rust-lang.org/tools/install/).

flop/Cargo.lock

@@ -1,6 +1,6 @@
 [package]
 name = "flop"
-version = "0.1.0"
+version = "0.1.1"
 edition = "2021"
 
 # See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html

flop/Cargo.toml

@@ -61,11 +61,11 @@ pub fn run(data: &DMatrix<f64>, config: FlopConfig) -> Dag {
 
     let num_perturbations = (p as f64).ln().round() as usize;
 
-    let cov = matrix::cov_matrix(data);
+    let corr = matrix::corr_matrix(data);
 
-    let mut best_perm = cholesky::cholesky_left_min_diag(&cov).1;
+    let mut best_perm = cholesky::cholesky_left_min_diag(&corr).1;
 
-    let score = Bic::from_cov(n, cov, config.lambda);
+    let score = Bic::from_cov(n, corr, config.lambda);
 
     let mut rng = thread_rng();
     let mut best_bic = f64::MAX;

flop/src/algo.rs

@@ -1,6 +1,6 @@
 [package]
 name = "flopsearch"
-version = "0.1.1"
+version = "0.1.2"
 edition = "2021"
 
 # See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html

flop_python/Cargo.toml

@@ -1,6 +1,6 @@
 Package: flopsearch
 Title: Embracing Discrete Search: A Reasonable Approach to Causal Structure Learning
-Version: 0.1.1
+Version: 0.1.2
 Authors@R: c(
     person("Marcel", "Wienöbst", email = "marcel.wienoebst@gmx.de", role = c("aut", "cre", "cph")),
     person("Sebastian", "Weichwald", role = "aut"),

flop_r/DESCRIPTION

@@ -25,7 +25,7 @@ flopsearch provides an effective and easy-to-use causal discovery algorithm for
 You can install the development version of flopsearch from [GitHub](https://github.com/) with:
 
 ``` r
-install.packages("https://github.com/CausalDisco/flopsearch/releases/download/v0.1.1/flopsearch.tar.gz")
+install.packages("https://github.com/CausalDisco/flopsearch/releases/download/v0.1.2/flopsearch.tar.gz")
 ```
 
 This requires a working installation of the [Rust toolchain](https://rust-lang.org/tools/install/).

flop_r/README.Rmd

@@ -16,7 +16,7 @@ You can install the development version of flopsearch from
 [GitHub](https://github.com/) with:
 
 ``` r
-install.packages("https://github.com/CausalDisco/flopsearch/releases/download/v0.1.1/flopsearch.tar.gz")
+install.packages("https://github.com/CausalDisco/flopsearch/releases/download/v0.1.2/flopsearch.tar.gz")
 ```
 
 This requires a working installation of the [Rust

flop_r/README.md

@@ -1,7 +1,7 @@
 [package]
 name = 'flop_r'
 publish = false
-version = '0.1.1'
+version = '0.1.2'
 edition = '2024'
 rust-version = '1.85'