Merge pull request #68 from BrainAnnex/dev

2nd round of final wrap-up for Beta37

Author: BrainAnnex

experiments/reactions_single_compartment/react_1.ipynb

@@ -22,6 +22,16 @@
     "LIFE123_VERSION = \"1.0.0.beta.37\"      # Version this experiment is based on"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "b5b8a8b0-d417-4432-b6a8-c196af57b105",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "#import set_path              # Using MyBinder?  Uncomment this before running the next cell!"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 2,
@@ -33,7 +43,7 @@
    "source": [
     "#import sys\n",
     "#sys.path.append(\"C:/some_path/my_env_or_install\")   # CHANGE to the folder containing your venv or libraries installation!\n",
-    "# NOTE: If any of the imports below can't find a module, uncomment the lines above\n",
+    "# NOTE: If any of the imports below can't find a module, uncomment the lines above, or try:  import set_path\n",
     "\n",
     "import life123"
    ]

experiments/reactions_single_compartment/react_1.py

@@ -22,10 +22,13 @@
 LAST_REVISED = "July 24, 2024"
 LIFE123_VERSION = "1.0.0.beta.37"      # Version this experiment is based on
 
+# %%
+#import set_path              # Using MyBinder?  Uncomment this before running the next cell!
+
 # %% tags=[]
 #import sys
 #sys.path.append("C:/some_path/my_env_or_install")   # CHANGE to the folder containing your venv or libraries installation!
-# NOTE: If any of the imports below can't find a module, uncomment the lines above
+# NOTE: If any of the imports below can't find a module, uncomment the lines above, or try:  import set_path
 
 import life123
 

experiments/reactions_single_compartment/react_2_a.ipynb

@@ -28,6 +28,16 @@
     "LIFE123_VERSION = \"1.0.0.beta.37\"    # Version this experiment is based on"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "6b948942-a836-4881-a343-246c83cd5503",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "#import set_path              # Using MyBinder?  Uncomment this before running the next cell!"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 2,
@@ -39,7 +49,7 @@
    "source": [
     "#import sys\n",
     "#sys.path.append(\"C:/some_path/my_env_or_install\")   # CHANGE to the folder containing your venv or libraries installation!\n",
-    "# NOTE: If any of the imports below can't find a module, uncomment the lines above\n",
+    "# NOTE: If any of the imports below can't find a module, uncomment the lines above, or try:  import set_path\n",
     "\n",
     "import numpy as np\n",
     "import ipynbname\n",

experiments/reactions_single_compartment/react_2_a.py

@@ -28,10 +28,13 @@
 LAST_REVISED = "July 24, 2024"
 LIFE123_VERSION = "1.0.0.beta.37"    # Version this experiment is based on
 
+# %%
+#import set_path              # Using MyBinder?  Uncomment this before running the next cell!
+
 # %% tags=[]
 #import sys
 #sys.path.append("C:/some_path/my_env_or_install")   # CHANGE to the folder containing your venv or libraries installation!
-# NOTE: If any of the imports below can't find a module, uncomment the lines above
+# NOTE: If any of the imports below can't find a module, uncomment the lines above, or try:  import set_path
 
 import numpy as np
 import ipynbname

experiments/reactions_single_compartment/react_2_b.ipynb

@@ -25,6 +25,16 @@
     "LIFE123_VERSION = \"1.0.0.beta.37\"    # Version this experiment is based on"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "1e0ae9a9-9d0c-4edf-a5f2-1c589419e6cf",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "#import set_path              # Using MyBinder?  Uncomment this before running the next cell!"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 2,
@@ -36,7 +46,7 @@
    "source": [
     "#import sys\n",
     "#sys.path.append(\"C:/some_path/my_env_or_install\")   # CHANGE to the folder containing your venv or libraries installation!\n",
-    "# NOTE: If any of the imports below can't find a module, uncomment the lines above    \n",
+    "# NOTE: If any of the imports below can't find a module, uncomment the lines above, or try:  import set_path   \n",
     "\n",
     "import ipynbname\n",
     "\n",

experiments/reactions_single_compartment/react_2_b.py

@@ -25,10 +25,13 @@
 LAST_REVISED = "July 24, 2024"
 LIFE123_VERSION = "1.0.0.beta.37"    # Version this experiment is based on
 
+# %%
+#import set_path              # Using MyBinder?  Uncomment this before running the next cell!
+
 # %% tags=[]
 #import sys
 #sys.path.append("C:/some_path/my_env_or_install")   # CHANGE to the folder containing your venv or libraries installation!
-# NOTE: If any of the imports below can't find a module, uncomment the lines above    
+# NOTE: If any of the imports below can't find a module, uncomment the lines above, or try:  import set_path   
 
 import ipynbname
 

experiments/reactions_single_compartment/react_2_c.ipynb

@@ -28,6 +28,16 @@
     "LIFE123_VERSION = \"1.0.0.beta.37\"    # Version this experiment is based on"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "bfc75f60-dd56-413b-a1e0-77e69953f0ed",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "#import set_path              # Using MyBinder?  Uncomment this before running the next cell!"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 2,
@@ -39,7 +49,7 @@
    "source": [
     "#import sys\n",
     "#sys.path.append(\"C:/some_path/my_env_or_install\")   # CHANGE to the folder containing your venv or libraries installation!\n",
-    "# NOTE: If any of the imports below can't find a module, uncomment the lines above  \n",
+    "# NOTE: If any of the imports below can't find a module, uncomment the lines above, or try:  import set_path \n",
     "\n",
     "from life123 import check_version, ChemData, UniformCompartment\n",
     "\n",

experiments/reactions_single_compartment/react_2_c.py

@@ -28,10 +28,13 @@
 LAST_REVISED = "July 24, 2024"
 LIFE123_VERSION = "1.0.0.beta.37"    # Version this experiment is based on
 
+# %%
+#import set_path              # Using MyBinder?  Uncomment this before running the next cell!
+
 # %% tags=[]
 #import sys
 #sys.path.append("C:/some_path/my_env_or_install")   # CHANGE to the folder containing your venv or libraries installation!
-# NOTE: If any of the imports below can't find a module, uncomment the lines above  
+# NOTE: If any of the imports below can't find a module, uncomment the lines above, or try:  import set_path 
 
 from life123 import check_version, ChemData, UniformCompartment
 

requirements.txt

@@ -1,3 +1,4 @@
+jsonschema==4.17.3
 jupyterlab==3.4.8
 jupytext==1.14.1