Merge pull request #84 from BrainAnnex/dev

Changed version to "1.0.0rc4"

Author: BrainAnnex

README.md

@@ -1,7 +1,7 @@
 # Life123
 Dynamical Modeling of Biological Systems in 1, 2 and 3D (as well as single-compartment reactions)
 
-Includes diffusion, reactions, diffusion/reaction and (coming soon) membranes and compartments.
+Includes diffusion, reactions, diffusion/reaction, membranes and compartments.
 
 ## Fundamental Goals
 1. Detailed, quantitative biological simulations, including whole prokaryotic cells (bacteria), and later eukaryotic cells

environment.yml

@@ -3,14 +3,14 @@ channels:
   - conda-forge
 dependencies:
   - python=3.9
-  - numpy=1.22.4
+  - numpy=1.26.4
   - pytest=6.2.5
-  - jupyterlab=3.4.8
+  - jupyterlab=3.6.8
   - ipywidgets=7.7.1
   - jupyter-dash=0.4.2
-  - plotly=5.9.0
-  - pandas=1.4.3
-  - scipy=1.10.1
+  - plotly=5.24.1
+  - pandas=1.5.3
+  - scipy=1.13.1
   - pip
   - pip:
       - neo4j==4.4.11

life123/__init__.py

@@ -10,7 +10,7 @@
     :license:       MIT.  See LICENSE file for more details.
 """
 
-__version__ = "1.0.0rc3"
+__version__ = "1.0.0rc4"
 
 
 from life123.bio_sim_1d import BioSim1D

pyproject.toml

@@ -0,0 +1,42 @@
+[build-system]
+requires = ["hatchling"]
+build-backend = "hatchling.build"
+
+[project]
+name = "life123"
+version = "1.0-rc.4"
+authors = [
+  { name = "Julian West Life123.science" },
+]
+maintainers = [
+  { email = "julian@brainannex.org" },
+]
+description = "Dynamical Modeling of Biological Systems - Quantitative Reactomics"
+readme = "README.md"
+license = "MIT"
+requires-python = ">=3.9"
+classifiers = [
+    "Programming Language :: Python :: 3",
+    "License :: OSI Approved :: MIT License",
+    "Operating System :: OS Independent",
+]
+dependencies = [
+	"neoaccess==4.4.1",
+	"numpy~=1.26.4",
+	"scipy~=1.13.1",
+	"pandas~=1.5.3",
+	"plotly~=5.24.1"
+]
+keywords = [
+  "systems biology",
+  "dynamical modeling",
+  "reactions and diffusion",
+  "quantitative reactomics"
+]
+
+[project.urls]
+Homepage = "https://life123.science"
+"Home-page" = "https://life123.science"
+"Bug Tracker" = "https://github.com/BrainAnnex/life123/issues"
+Source = "https://github.com/BrainAnnex/life123"
+Documentation = "https://life123.science"