Visualize the segmentation results in Python?

[ywu202300]

Hi,

In the steinbock pipeline, is there a way to visualize the segmentation results from steinbock with napari or other Python tools

[Milad4849]

Hi @ywu202300

Please have a look at the visualization section of the documentation.

[jwindhager]

https://github.com/BIIFSweden/steinbock-webinar/blob/main/napari.ipynb

https://github.com/BodenmillerGroup/ImagingWorkshop2023/blob/main/Session1_image_visualization/napari.ipynb