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Description
Dear developers and maintainers of Bia-binder,
I am unable to initialize bia-binder environments, including all the examples listed on https://bia-binder.readthedocs.io/en/latest/ and my personal repo.
Example: Bia-binder demo for BioStudies notebooks fails to launch
https://bia-binder.readthedocs.io/en/latest/
URL: https://binder.bioimagearchive.org/v2/gh/EBIBioStudies/biostudies-notebooks/HEAD
Description:
I tried to launch the Binder demo for Reading BioStudies images using the link above, but the build fails during environment setup with a mamba installation error.
Error output:
An unexpected error has occurred. Conda has prepared the above report.
Looking for: ['mamba==0.7.4']
pkgs/main/noarch
time: 1.116
time: 25.032
building at STEP "RUN TIMEFORMAT='time: %3R' bash -c 'time /tmp/install-miniforge.bash' && rm -rf /tmp/install-miniforge.bash /tmp/env": while running runtime: exit status 1
The complete log cab found here: biaimage_log.txt
Additional notes:
- The Binder build log shows
mamba (0.7.4)being used. - It appears that the environment setup script (
install-miniforge.bash) fails while installing dependencies. - This prevents the notebook from launching successfully.
Steps to reproduce:
- Go to https://binder.bioimagearchive.org/v2/gh/EBIBioStudies/biostudies-notebooks/HEAD
- Wait for the environment to build.
- Observe that the build fails with the error above.
Expected behavior:
The Binder instance should build successfully and open the demo notebook for reading BioStudies images.
Environment:
- Tried in Chrome Version 141.0.7390.109 (Official Build) (64-bit)
- Tested on 24 Oct 2025
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