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kMutagenekMutagene
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Port code from core project
1 parent 2bd24a2 commit 3dd61a0

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‎.github/workflows/build-and-test.yml

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uses: codecov/codecov-action@v5
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with:
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token: ${{ secrets.CODECOV_TOKEN }}
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slug: BioFSharp/BioFSharp.XYZ
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slug: BioFSharp/BioFSharp.BioContainers
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build-and-test-windows:
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‎BioFSharp.XYZ.sln renamed to ‎BioFSharp.BioContainers.sln

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@@ -5,12 +5,8 @@ VisualStudioVersion = 17.0.31903.59
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MinimumVisualStudioVersion = 10.0.40219.1
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Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "src", "src", "{7501C4DF-A844-40A0-8742-3343E48E55F1}"
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EndProject
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Project("{F2A71F9B-5D33-465A-A702-920D77279786}") = "BioFSharp.XYZ", "src\BioFSharp.XYZ\BioFSharp.XYZ.fsproj", "{BAC97B5C-B9A6-40D6-B533-0A07E12939ED}"
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EndProject
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Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "tests", "tests", "{D152DA0B-8F60-4611-B613-642379E2B17C}"
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EndProject
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Project("{F2A71F9B-5D33-465A-A702-920D77279786}") = "BioFSharp.XYZ.Tests", "tests\BioFSharp.XYZ.Tests\BioFSharp.XYZ.Tests.fsproj", "{CB9E38BC-EE86-44EB-AFF5-91D1AF713ADC}"
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EndProject
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Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "project", "project", "{77A50576-9359-44E5-B2F9-95318AB3DAEA}"
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ProjectSection(SolutionItems) = preProject
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.gitignore = .gitignore
@@ -39,31 +35,42 @@ Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = ".ci", ".ci", "{812698C9-F1C
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.github\workflows\deploy-docs.yml = .github\workflows\deploy-docs.yml
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EndProjectSection
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EndProject
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Project("{F2A71F9B-5D33-465A-A702-920D77279786}") = "BioFSharp.BioContainers", "src\BioFSharp.BioContainers\BioFSharp.BioContainers.fsproj", "{7D8326B2-8E06-4626-AA90-C1B885A0BC12}"
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EndProject
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Project("{F2A71F9B-5D33-465A-A702-920D77279786}") = "BioFSharp.BioContainers.Tests", "tests\BioFSharp.BioContainers.Tests\BioFSharp.BioContainers.Tests.fsproj", "{D9C5FFEE-B9DD-46E5-84B8-2E83E77D3187}"
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EndProject
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Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "Scripts", "Scripts", "{907323D1-E132-4F08-A1EB-AB8E1F434F56}"
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ProjectSection(SolutionItems) = preProject
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tests\BioFSharp.BioContainers.Tests\scripts\blast.fsx = tests\BioFSharp.BioContainers.Tests\scripts\blast.fsx
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tests\BioFSharp.BioContainers.Tests\scripts\Docker.fsx = tests\BioFSharp.BioContainers.Tests\scripts\Docker.fsx
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EndProjectSection
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EndProject
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Global
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GlobalSection(SolutionConfigurationPlatforms) = preSolution
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Debug|Any CPU = Debug|Any CPU
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Release|Any CPU = Release|Any CPU
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EndGlobalSection
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GlobalSection(ProjectConfigurationPlatforms) = postSolution
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{BAC97B5C-B9A6-40D6-B533-0A07E12939ED}.Debug|Any CPU.ActiveCfg = Debug|Any CPU
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{BAC97B5C-B9A6-40D6-B533-0A07E12939ED}.Debug|Any CPU.Build.0 = Debug|Any CPU
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{BAC97B5C-B9A6-40D6-B533-0A07E12939ED}.Release|Any CPU.ActiveCfg = Release|Any CPU
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{BAC97B5C-B9A6-40D6-B533-0A07E12939ED}.Release|Any CPU.Build.0 = Release|Any CPU
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{CB9E38BC-EE86-44EB-AFF5-91D1AF713ADC}.Debug|Any CPU.ActiveCfg = Debug|Any CPU
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{CB9E38BC-EE86-44EB-AFF5-91D1AF713ADC}.Debug|Any CPU.Build.0 = Debug|Any CPU
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{CB9E38BC-EE86-44EB-AFF5-91D1AF713ADC}.Release|Any CPU.ActiveCfg = Release|Any CPU
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{CB9E38BC-EE86-44EB-AFF5-91D1AF713ADC}.Release|Any CPU.Build.0 = Release|Any CPU
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{8DCCA688-871C-49DD-BC06-4877F714497C}.Debug|Any CPU.ActiveCfg = Debug|Any CPU
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{8DCCA688-871C-49DD-BC06-4877F714497C}.Debug|Any CPU.Build.0 = Debug|Any CPU
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{8DCCA688-871C-49DD-BC06-4877F714497C}.Release|Any CPU.ActiveCfg = Release|Any CPU
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{8DCCA688-871C-49DD-BC06-4877F714497C}.Release|Any CPU.Build.0 = Release|Any CPU
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{7D8326B2-8E06-4626-AA90-C1B885A0BC12}.Debug|Any CPU.ActiveCfg = Debug|Any CPU
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{7D8326B2-8E06-4626-AA90-C1B885A0BC12}.Debug|Any CPU.Build.0 = Debug|Any CPU
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{7D8326B2-8E06-4626-AA90-C1B885A0BC12}.Release|Any CPU.ActiveCfg = Release|Any CPU
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{7D8326B2-8E06-4626-AA90-C1B885A0BC12}.Release|Any CPU.Build.0 = Release|Any CPU
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{D9C5FFEE-B9DD-46E5-84B8-2E83E77D3187}.Debug|Any CPU.ActiveCfg = Debug|Any CPU
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{D9C5FFEE-B9DD-46E5-84B8-2E83E77D3187}.Debug|Any CPU.Build.0 = Debug|Any CPU
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{D9C5FFEE-B9DD-46E5-84B8-2E83E77D3187}.Release|Any CPU.ActiveCfg = Release|Any CPU
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{D9C5FFEE-B9DD-46E5-84B8-2E83E77D3187}.Release|Any CPU.Build.0 = Release|Any CPU
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EndGlobalSection
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GlobalSection(SolutionProperties) = preSolution
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HideSolutionNode = FALSE
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EndGlobalSection
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GlobalSection(NestedProjects) = preSolution
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{BAC97B5C-B9A6-40D6-B533-0A07E12939ED} = {7501C4DF-A844-40A0-8742-3343E48E55F1}
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{CB9E38BC-EE86-44EB-AFF5-91D1AF713ADC} = {D152DA0B-8F60-4611-B613-642379E2B17C}
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{8DCCA688-871C-49DD-BC06-4877F714497C} = {78399A41-F06A-4B35-AA24-E2E20209D8DE}
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{7D8326B2-8E06-4626-AA90-C1B885A0BC12} = {7501C4DF-A844-40A0-8742-3343E48E55F1}
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{D9C5FFEE-B9DD-46E5-84B8-2E83E77D3187} = {D152DA0B-8F60-4611-B613-642379E2B17C}
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{907323D1-E132-4F08-A1EB-AB8E1F434F56} = {D152DA0B-8F60-4611-B613-642379E2B17C}
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EndGlobalSection
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EndGlobal

‎README.md

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# BioFSharp.XYZ
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# BioFSharp.BioContainers
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![Logo](docs/img/Logo_large.png)
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A template repository for creating an extension package for BioFSharp.
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## Content
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- `src/BioFSharp.XYZ`: The main project folder. Contains a library with BioFSharp core dependency.
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- `tests/BioFSharp.XYZ.Tests`: The test project folder. Contains a XUnit test project
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- `src/BioFSharp.BioContainers`: The main project folder. Contains a library with BioFSharp core dependency.
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- `tests/BioFSharp.BioContainers.Tests`: The test project folder. Contains a XUnit test project
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- `build/build.fsproj`: A FAKE build project that handles building, testing, packaging, publishing, etc.
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- `docs`: the docs folder contains an example index.fsx file with simple documentation boilerplate.
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- Rename some things: Replace `XYZ` with the name of your package
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- `PackageTemplate.sln`
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- `src/BioFSharp.XYZ`
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- `src/BioFSharp.XYZ/BioFSharp.XYZ.fsproj`
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- `src/BioFSharp.BioContainers`
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- `src/BioFSharp.BioContainers/BioFSharp.BioContainers.fsproj`
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- Rename and add nuget package metadata
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- `tests/BioFSharp.XYZ`
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- `tests/BioFSharp.XYZ.Tests/BioFSharp.XYZ.Tests.fsproj`
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- Also make sure to fix the project reference to BioFSharp.XYZ when renamed
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- `tests/BioFSharp.BioContainers`
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- `tests/BioFSharp.BioContainers.Tests/BioFSharp.BioContainers.Tests.fsproj`
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- Also make sure to fix the project reference to BioFSharp.BioContainers when renamed
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- in `build/ProjectInfo.fs`:
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- Set project name:
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```fsharp
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let project = "BioFSharp.XYZ" // replace with the name of your project
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let project = "BioFSharp.BioContainers" // replace with the name of your project
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```
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- Set git owner:
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```fsharp
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```fsharp
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let testProjects =
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[
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"tests/BioFSharp.XYZ.Tests/BioFSharp.XYZ.Tests.fsproj" // replace with the name of your test project
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"tests/BioFSharp.BioContainers.Tests/BioFSharp.BioContainers.Tests.fsproj" // replace with the name of your test project
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]
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```
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- in `.github/workflows/build-and-test.yml`: change codecov slug

‎build/ProjectInfo.fs

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open Fake.Core
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let project = "BioFSharp.XYZ"
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let project = "BioFSharp.BioContainers"
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let testProjects =
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[
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"tests/BioFSharp.XYZ.Tests/BioFSharp.XYZ.Tests.fsproj"
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"tests/BioFSharp.BioContainers.Tests/BioFSharp.BioContainers.Tests.fsproj"
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]
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let solutionFile = $"{project}.sln"

‎docs/index.fsx

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(**
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# BioFSharp.XYZ
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# BioFSharp.BioContainers
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![Logo](./img/Logo_large.png)
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Make sure to load any external references via nuget.
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*)
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#r "nuget: BioFSharp, 2.0.0-preview.3"
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#I @"..\src\BioFSharp.XYZ\bin\Release\netstandard2.0"
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#r "BioFSharp.XYZ.dll"
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#I @"..\src\BioFSharp.BioContainers\bin\Release\netstandard2.0"
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#r "BioFSharp.BioContainers.dll"
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open BioFSharp.XYZ
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open BioFSharp.BioContainers
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let o = BioTalk.helloBio "Kev"
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