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add visualization files Brannmark, Borghans, Crauste, Elowitz, Perelson, Weber, Zheng (#179)
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‎Benchmark-Models/Borghans_BiophysChem1997/Borghans_BiophysChem1997.yaml

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- observables_Borghans_BiophysChem1997.tsv
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sbml_files:
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visualization_files:
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- visualizationSpecification_Borghans_BiophysChem1997.tsv

‎Benchmark-Models/Borghans_BiophysChem1997/visualizationSpecification_Borghans_BiophysChem1997.tsv

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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset
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plot1 MeanAndSD LinePlot time lin values lin model1_data1 - Ca Ca time 0 0.0

‎Benchmark-Models/Brannmark_JBC2010/Brannmark_JBC2010.yaml

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- observables_Brannmark_JBC2010.tsv
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sbml_files:
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visualization_files:
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- visualizationSpecification_Brannmark_JBC2010.tsv

‎Benchmark-Models/Brannmark_JBC2010/visualizationSpecification_Brannmark_JBC2010.tsv

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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale yValues xValues xOffset yOffset
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plot1 MeanAndSD ScatterPlot simulation lin measurements lin IRS1_P_DosR time 0 0
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plot4 MeanAndSD LinePlot time lin values lin IRS1_P_DosR time 1 1
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plot2 MeanAndSD LinePlot time lin values lin IR1_P time 0 0
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plot3 MeanAndSD LinePlot time lin values lin IRS1_P time 0 0

‎Benchmark-Models/Crauste_CellSystems2017/Crauste_CellSystems2017.yaml

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- observables_Crauste_CellSystems2017.tsv
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sbml_files:
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visualization_files:
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- visualizationSpecification_Crauste_CellSystems2017.tsv

‎Benchmark-Models/Crauste_CellSystems2017/visualizationSpecification_Crauste_CellSystems2017.tsv

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plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset
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plot1 MeanAndSD LinePlot time lin values lin condition1 - observable_Naive observable_Naive time 0 0
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plot2 MeanAndSD LinePlot time lin values lin condition1 - observable_EarlyEffector observable_EarlyEffector time 0 0
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plot3 MeanAndSD LinePlot time lin values lin condition1 - observable_LateEffector observable_LateEffector time 0 0
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plot4 MeanAndSD LinePlot time lin values lin condition1 - observable_Memory observable_Memory time 0 0

‎Benchmark-Models/Elowitz_Nature2000/Elowitz_Nature2000.yaml

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- observables_Elowitz_Nature2000.tsv
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sbml_files:
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- model_Elowitz_Nature2000.xml
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visualization_files:
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- visualizationSpecification_Elowitz_Nature2000.tsv

‎Benchmark-Models/Elowitz_Nature2000/visualizationSpecification_Elowitz_Nature2000.tsv

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plotId plotTypeData plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset
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plot1 MeanAndSD LinePlot time lin values lin model1_data1 - fluorescence fluorescence time 0 0

‎Benchmark-Models/Perelson_Science1996/Perelson_Science1996.yaml

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sbml_files:
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visualization_files:
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- visualizationSpecification_Perelson_Science1996.tsv

‎Benchmark-Models/Perelson_Science1996/visualizationSpecification_Perelson_Science1996.tsv

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plotId plotTypeData plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset
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plot1 MeanAndSD LinePlot time lin values lin HIV-mRNA copies - task0_model0_perelson1_V task0_model0_perelson1_V time 0 0

‎Benchmark-Models/Weber_BMC2015/Weber_BMC2015.yaml

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sbml_files:
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visualization_files:
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- visualizationSpecification_Weber_BMC2015.tsv

‎Benchmark-Models/Weber_BMC2015/visualizationSpecification_Weber_BMC2015.tsv

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plotId plotTypeData plotTypeSimulation xLabel xScale yLabel yScale yValues xValues xOffset yOffset
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plot1 MeanAndSD LinePlot time lin values lin yPKDpN0 time 0 0
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plot2 MeanAndSD LinePlot time lin values lin yPKDpN24 time 0 0
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plot3 MeanAndSD LinePlot time lin values lin yPKDpN25 time 0 0
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plot4 MeanAndSD LinePlot time lin values lin yPI4K3BpRN24 time 0 0
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plot5 MeanAndSD LinePlot time lin values lin yPI4K3Bt time 0 0
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plot6 MeanAndSD LinePlot time lin values lin yCERTt time 0 0
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plot7 MeanAndSD LinePlot time lin values lin yCERTpRN24 time 0 0
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plot8 MeanAndSD LinePlot time lin values lin yPKDt time 0 0

‎Benchmark-Models/Zheng_PNAS2012/Zheng_PNAS2012.yaml

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visualization_files:
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- visualizationSpecification_Zheng_PNAS2012.tsv

‎Benchmark-Models/Zheng_PNAS2012/visualizationSpecification_Zheng_PNAS2012.tsv

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plotId plotTypeData plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset
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plot1 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me0K36me0 observable_K27me0K36me0 time 0 0
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plot2 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me0K36me1 observable_K27me0K36me1 time 0 0
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plot3 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me1K36me0 observable_K27me1K36me0 time 0 0
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plot4 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me0K36me2 observable_K27me0K36me2 time 0 0
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plot5 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me1K36me1 observable_K27me1K36me1 time 0 0
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plot6 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me2K36me0 observable_K27me2K36me0 time 0 0
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plot7 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me0K36me3 observable_K27me0K36me3 time 0 0
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plot8 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me1K36me2 observable_K27me1K36me2 time 0 0
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plot9 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me2K36me1 observable_K27me2K36me1 time 0 0
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plot10 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me3K36me0 observable_K27me3K36me0 time 0 0
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plot11 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me1K36me3 observable_K27me1K36me3 time 0 0
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plot12 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me2K36me2 observable_K27me2K36me2 time 0 0
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plot13 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me3K36me1 observable_K27me3K36me1 time 0 0
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plot14 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me2K36me3 observable_K27me2K36me3 time 0 0
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plot15 MeanAndSD LinePlot time lin values lin simCondition - observable_K27me3K36me2 observable_K27me3K36me2 time 0 0

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