Initial changes to use providentia as a module

Author: albavilanova

MANIFEST.in

@@ -0,0 +1,2 @@
+recursive-include providentia/settings *.yaml
+recursive-include providentia/assets *.png *.icns

configurations/module.conf

@@ -0,0 +1,28 @@
+[DEBUG]
+network = EBAS
+species = sconco3
+resolution = hourly
+start_date = 20170101
+end_date = 20200101
+experiments = cams61_emep_ph2-eu-000, cams61_monarch_ph2-eu-000, cams61_silam_ph2-eu-000 (EMEP, MONARCH, SILAM)
+temporal_colocation = True
+spatial_colocation = False
+report_type = debug
+report_summary = True
+report_stations = False
+report_title = Providentia Report
+report_filename = /home/avilanov/data/providentia/reports/report.pdf
+statistic_mode = Temporal|Spatial
+statistic_aggregation = Median
+periodic_statistic_mode = Cycle
+periodic_statistic_aggregation = Median
+timeseries_statistic_aggregation = Median
+harmonise_summary = False
+harmonise_stations = False
+
+    [[Europe]]
+    longitude = -28, 53
+    latitude = 35, 72
+
+    [[Spain]]
+    country = keep: Spain ||

providentia/actris.py

@@ -11,6 +11,7 @@
 import re
 import time
 from tqdm import tqdm
+import importlib.resources as pkg_resources
 import numpy as np
 import pandas as pd
 import pycountry
@@ -25,18 +26,18 @@
 PROVIDENTIA_ROOT = os.path.dirname(CURRENT_PATH)
 
 # load ACTRIS mapping files
-ghost_actris_variables = yaml.safe_load(open(join(
-    PROVIDENTIA_ROOT, 'settings', 'internal', 'actris', 'ghost_actris_variables.yaml')))
+ghost_actris_variables = yaml.safe_load(
+    pkg_resources.open_text("providentia.settings.internal.actris", "ghost_actris_variables.yaml"))
 metadata_dict = yaml.safe_load(
-    open(join(PROVIDENTIA_ROOT, 'settings', 'internal', 'actris', 'metadata.yaml')))
+    pkg_resources.open_text("providentia.settings.internal.actris", "metadata.yaml"))
 coverages_dict = yaml.safe_load(
-    open(join(PROVIDENTIA_ROOT, 'settings', 'internal', 'actris', 'coverages.yaml')))
-variable_mapping = yaml.safe_load(open(join(
-    PROVIDENTIA_ROOT, 'settings', 'internal', 'actris', 'variable_mapping.yaml')))
+    pkg_resources.open_text("providentia.settings.internal.actris", "coverages.yaml"))
+variable_mapping = yaml.safe_load(
+    pkg_resources.open_text("providentia.settings.internal.actris", "variable_mapping.yaml"))
 variable_mapping = {k: v for k,
                     v in variable_mapping.items() if k.strip() and v}
 flags_dict = yaml.safe_load(
-    open(join(PROVIDENTIA_ROOT, 'settings', 'internal', 'actris', 'flags.yaml')))
+    pkg_resources.open_text("providentia.settings.internal.actris", "flags.yaml"))
 
 # initialise dictionary for storing pointers to shared memory variables in read step 
 shared_memory_vars = {}