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rename functions
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bin/filter_best_bitscore.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -7,14 +7,14 @@
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import pandas as pd
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def filter_best_bitscore(df, group_col, score_col):
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def filter_dataframe(df, group_col, score_col):
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idxmax = df.groupby(group_col)[score_col].idxmax()
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df = df.loc[idxmax].reset_index(drop=True)
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return df
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def main(args):
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blast_df = pd.read_csv(args.input)
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filtered_df = filter_best_bitscore(blast_df, args.group_col, args.score_col)
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filtered_df = filter_dataframe(blast_df, args.group_col, args.score_col)
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filtered_df.to_csv(args.output, index=False)
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2020

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