Update GBIF APIs

[mjwestgate]

Currently it is possible to get data from ALA via a DOI using either:

atlas_occurrences(doi = "my-doi")

Or equivalently:

galah_call() |>
  filter(doi == "my-doi") |>
  collect()

Historically this has not been supported for other atlases; however the ability to programmatically download a dataset from its DOI has recently been added to {rgbif} version 3.8.2. Probably worth adding this to galah as well.

Some relevant information:

• release notes
• GH issue
• relevant commit

[mjwestgate]

Expanding this to include the following:

• name-matching with multiple arguments, passed as a data.frame or tibble
• find a taxon name from a taxonConceptID
• switch to using predicates for count querys to improve consistency between counts and downloads
  • subproblem of improving parsing of predicates, e.g. to include or, in, isNull, isNotNull queries