sort imports

Author: Adamtaranto

src/tirmite/cmd_TIR.py

@@ -9,7 +9,7 @@
 
 from tirmite.logs import init_logging
 from tirmite.runBlastn import makeBlast
-from tirmite.utils import manageTemp, cleanID, getTimestring, checkUniqueID
+from tirmite.utils import checkUniqueID, cleanID, getTimestring, manageTemp
 from tirmite.wrapping import run_cmd
 
 

src/tirmite/cmd_tirmite.py

@@ -8,9 +8,9 @@
 from tirmite._version import __version__
 from tirmite.hmmer_wrappers import cmdScriptHMMER
 from tirmite.logs import init_logging
+import tirmite.tirmitetools as tirmite
 from tirmite.utils import dochecks, importFasta
 from tirmite.wrapping import run_cmd
-import tirmite.tirmitetools as tirmite
 
 
 def mainArgs():

src/tirmite/hmmer_wrappers.py

@@ -1,7 +1,7 @@
-from shlex import quote
 import glob
 import os
 import re
+from shlex import quote
 import shutil
 
 from tirmite.wrapping import run_cmd

src/tirmite/runBlastn.py

@@ -1,5 +1,5 @@
-from shlex import quote
 import os
+from shlex import quote
 import shutil
 import subprocess
 import sys

src/tirmite/tirmitetools.py

@@ -1,10 +1,9 @@
 from collections import namedtuple
-from operator import attrgetter
 import glob
+from operator import attrgetter
 import os
 
-from Bio import AlignIO
-from Bio import SeqIO
+from Bio import AlignIO, SeqIO
 import pandas as pd
 
 from tirmite.utils import cleanID

src/tirmite/utils.py

@@ -1,9 +1,10 @@
+from collections import Counter
 from datetime import datetime
 import os
+import re
 import sys
+
 from Bio import SeqIO
-from collections import Counter
-import re
 
 
 def dochecks(args):

src/tirmite/wrapping.py

@@ -1,9 +1,9 @@
+import os
 import re
+import shutil
 import subprocess
-import tempfile
 import sys
-import os
-import shutil
+import tempfile
 
 
 # Note sure why I did this. Test removal.

tests/test_basic.py

@@ -1,5 +1,6 @@
 import pytest
 
+
 def test_basic():
     pass